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Report for CCDS16276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16276.1 Public Mus musculus 2 Or8i2 23 108 98 CCDS HistoryNCBI Gene:258763Re-query CCDS DB by CCDS ID:16276.1Re-query CCDS DB by GeneID:258763See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16276.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099869.1 ENSMUSP00000097454.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099869.1Link to Ensembl Protein Viewer:ENSMUSP00000097454.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099869Re-query CCDS DB by Protein ID:ENSMUSP00000097454
Original member Current member EBI ENSMUST00000215972.1 ENSMUSP00000149240.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215972.1Link to Ensembl Protein Viewer:ENSMUSP00000149240.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215972Re-query CCDS DB by Protein ID:ENSMUSP00000149240
Original member Current member EBI ENSMUST00000214857.1 ENSMUSP00000150156.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214857.1Link to Ensembl Protein Viewer:ENSMUSP00000150156.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214857Re-query CCDS DB by Protein ID:ENSMUSP00000150156
Original member Current member NCBI NM_146767.2 NP_666978.2 Accepted alive Link to Nucleotide Sequence:NM_146767.2Link to Protein Sequence:NP_666978.2Re-query CCDS DB by Nucleotide ID:NM_146767Re-query CCDS DB by Protein ID:NP_666978Link to BLAST:NP_666978.2

Chromosomal Locations for CCDS 16276.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87021610 87022542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGACAGAGAATAATTTCACAAAAGTGACAGTCTTCATGTTCAGTGGATTTTCAGATCACCCAGAATTAC
AAGTCAGTCTGTTCTTAATATTCCTTTTCATCTATTTATTCACTGTGTGGGGCAACATTGGGTTAATCTT
GTTAATTAGAATTGACTCTCAGCTTCACACACCTATGTATTTTTTCCTCAGCAATTTAGCATTCATTGAC
ATATTTTATTCCTCCACTGTAACACCCAAGGCAGTAGTTGATTTCCAGTCCACACAGAAATCAATATCCT
TTGTAGGCTGCTTTGTTCAGATGTATTTCTTTGTTGGTTTGGTGTGCAGTGAGTGTTTCCTTCTGGGATC
CATGGCTTATGATCGCTATGTAGCAATCTGCAATCCCTTACTATATTCTGTGATTATGTCCCAGAAGGTG
TGCAACTGGCTGGCAGTAATACCATACATGATAGGCTTCACAAATTCTCTGATATCCATCTGTGTGATAA
GCAGTTTGCCTCTCTGTGATCCCTACATCAATCATTTCTTTTGTGACACCACAGCTCTTTTAGCCCTGTC
CTGTGTAGATGCCTTCAGCACGGAATTGGTGATCTTTGTTCTAGCTGGGTTCACACTCCTCAGTTCTCTT
CTCATTATCACTTTCACTTATGTGACCATCATCTCAGCCATCCTTAGGATACAGTCAGCAGCTGGCAGGT
GGAAGGCTTTTTCTACATGCGCCTCTCACCTCACAGGGGTCACTGTCTTCTATGGCTCTTTGATTTTCAC
CTATTTGCAACCTGATAACACATCATCCCTCACCCAAGCACAGGTAGCCTCTGTGTTCTACACCATTGTT
ATTCCCATGCTGAACCCACTGATCTACAGTCTGAGAAACAAAGATGTGAAAAATGCTCTTCTGAGAGTCA
TCCACAGAAAACACCTTCTGTAA

Translation (310 aa):
MTENNFTKVTVFMFSGFSDHPELQVSLFLIFLFIYLFTVWGNIGLILLIRIDSQLHTPMYFFLSNLAFID
IFYSSTVTPKAVVDFQSTQKSISFVGCFVQMYFFVGLVCSECFLLGSMAYDRYVAICNPLLYSVIMSQKV
CNWLAVIPYMIGFTNSLISICVISSLPLCDPYINHFFCDTTALLALSCVDAFSTELVIFVLAGFTLLSSL
LIITFTYVTIISAILRIQSAAGRWKAFSTCASHLTGVTVFYGSLIFTYLQPDNTSSLTQAQVASVFYTIV
IPMLNPLIYSLRNKDVKNALLRVIHRKHLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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