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Report for CCDS88397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88397.1 Public Mus musculus 12 Serpina3g 23 108 98 CCDS HistoryNCBI Gene:20715Re-query CCDS DB by CCDS ID:88397.1Re-query CCDS DB by GeneID:20715See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88397.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043315.14 ENSMUSP00000041250.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043315.14Link to Ensembl Protein Viewer:ENSMUSP00000041250.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000043315Re-query CCDS DB by Protein ID:ENSMUSP00000041250
Original member Current member NCBI NM_001353612.1 NP_001340541.1 Accepted alive Link to Nucleotide Sequence:NM_001353612.1Link to Protein Sequence:NP_001340541.1Re-query CCDS DB by Nucleotide ID:NM_001353612Re-query CCDS DB by Protein ID:NP_001340541Link to BLAST:NP_001340541.1

Chromosomal Locations for CCDS 88397.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 104238314 104238344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104239035 104239308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104240247 104240397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104241036 104241326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGGTGCTGGTGAACTACATCTACTTTAAAGGCAAATGGAAGAACCCCTTTGACCCGAATGATACATTTA
AGTCCGAGTTCTACTTGGATGAGAAGAGGTCTGTGATTGTGTCCATGATGAAAACTGGTTACCTGACAAC
TCCCTACTTCCGGGATGAGGAGCTGTCCTGCACTGTGGTGGAGCTGAAATACACAGGAAATGCCAGTGCC
ATGTTCATCCTCCCTGACCAGGGCAGGATGCAGCAGGTGGAAGCAAGCTTACAACCAGAGACCCTGAGGA
AGTGGAAGAACTCTCTGAAGCCCAGGATGATACATGAGCTCCGCCTGCCCAAGTTCTCCATCTCCACCGA
CTACAGCCTGGAGCACATCCTTCCTGAGTTGGGCATCAGGGAAGTCTTCTCCACACAGGCTGACCTGTCT
GCAATCACAGGAACCAAGGATCTGAGAGTCTCTCAGGTGGTCCACAAGGCTGTGCTGGATGTGGCTGAGA
CAGGCACAGAGGCTGCTGCTGCCACAGGAATGGCAGGTGTCGGATGTTGTGCAGTTTTTGACTTTCTGGA
AATATTTTTCAACAGGCCATTCCTGATGATTATCTCTGACACAAAAGCTCACATTGCCCTCTTTATGGCA
AAAGTTACAAATCCAGAGAGATCTATGAACTTCCCAAATGGTGAGGGTGCTTCTTCCCAACGGCTGGAAT
CTAAGCGTTTATGTTTTGGTGATCCGCTATGCCTGATTGGACAGTGA

Translation (248 aa):
MVLVNYIYFKGKWKNPFDPNDTFKSEFYLDEKRSVIVSMMKTGYLTTPYFRDEELSCTVVELKYTGNASA
MFILPDQGRMQQVEASLQPETLRKWKNSLKPRMIHELRLPKFSISTDYSLEHILPELGIREVFSTQADLS
AITGTKDLRVSQVVHKAVLDVAETGTEAAAATGMAGVGCCAVFDFLEIFFNRPFLMIISDTKAHIALFMA
KVTNPERSMNFPNGEGASSQRLESKRLCFGDPLCLIGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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