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Report for CCDS17021.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17021.1 Public Mus musculus 2 Stk4 23 108 98 CCDS HistoryNCBI Gene:58231Re-query CCDS DB by CCDS ID:17021.1Re-query CCDS DB by GeneID:58231See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17021.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018353.13 ENSMUSP00000018353.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018353.13Link to Ensembl Protein Viewer:ENSMUSP00000018353.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000018353Re-query CCDS DB by Protein ID:ENSMUSP00000018353
Original member Current member NCBI NM_021420.4 NP_067395.1 Accepted alive Link to Nucleotide Sequence:NM_021420.4Link to Protein Sequence:NP_067395.1Re-query CCDS DB by Nucleotide ID:NM_021420Re-query CCDS DB by Protein ID:NP_067395Link to BLAST:NP_067395.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067395.1 487 Q9JI11 487 100% 0 0

Chromosomal Locations for CCDS 17021.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164074213 164074247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164079513 164079593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164083630 164083758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164086495 164086609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164088841 164089005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164096739 164096906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164098439 164098576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164099697 164099825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164100410 164100596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164117969 164118126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164151673 164151831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGGAGACCGTGCAGCTGAGGAACCCACCGCGCAGGCAGCTGAAAAAGTTGGATGAAGATAGTTTAACCA
AGCAGCCCGAGGAAGTGTTTGATGTCTTAGAGAAGCTTGGAGAGGGGTCTTATGGCAGCGTGTACAAGGC
TATTCATAAAGAGACTGGCCAGATTGTTGCAATCAAGCAAGTGCCCGTGGAATCGGACCTGCAGGAGATA
ATCAAGGAAATCTCCATCATGCAGCAGTGTGACAGCCCTCACGTAGTCAAGTATTATGGCAGCTACTTTA
AGAACACAGACCTGTGGATTGTTATGGAGTACTGTGGGGCTGGTTCTGTATCTGATATCATTCGGCTACG
GAACAAGACGTTAACAGAAGATGAAATAGCTACAATATTACAATCAACTCTTAAGGGACTAGAATACCTT
CATTTTATGAGAAAAATACACCGAGATATCAAGGCGGGAAATATTTTGCTAAACACAGAAGGCCATGCAA
AGCTTGCAGACTTTGGAGTCGCAGGTCAACTTACAGATACCATGGCAAAGAGGAATACAGTAATAGGGAC
CCCGTTTTGGATGGCTCCTGAAGTTATTCAGGAAATTGGGTACAACTGTGTGGCAGACATCTGGTCTCTG
GGAATAACTGCCATAGAAATGGCTGAAGGAAAGCCCCCATATGCTGATATCCATCCAATGAGGGCAATAT
TCATGATTCCTACAAACCCTCCTCCCACATTCCGTAAGCCAGAGCTGTGGTCAGACAACTTCATGGATTT
TGTGAAGCAGTGTCTGGTAAAAAGCCCGGAGCAGAGAGCCACAGCCACTCAGCTCCTACAGCACCCGTTT
GTTAAGAGTGCCAAAGGAGTGTCAATATTGCGAGACTTAATTAACGAAGCCATGGATGTGAAACTGAAGC
GCCAGGAAGCCCAGCAGCGGGAAGTGGACCAGGACGACGAGGAGAACTCAGAGGAGGATGAAATGGATTC
CGGCACGATGGTTCGAGCTGCCGGTGATGAGATGGGCACTGTCCGAGTAGCCAGCACGATGAGCGGAGGA
GCCAATACTATGATTGAGCACGGTGACACGTTGCCGTCCCAGCTGGGCACCATGGTGATCAACACGGAGG
ACGAGGAAGAGGAAGGAACCATGAAAAGAAGAGATGAGACCATGCAGCCTGCAAAACCGTCTTTCCTTGA
ATACTTTGAACAAAAAGAAAAGGAAAATCAGATCAACAGCTTTGGCAAGAATGTATCTGGCTCTCTGAAG
AATTCTTCCGATTGGAAAATCCCTCAGGATGGAGACTATGAGTTTCTCAAGAGCTGGACTGTGGAGGACC
TTCAGAAGAGGCTCTTGGCCCTCGACCCCATGATGGAACAGGAAATGGAAGAGATCCGGCAGAAGTACCG
GTCCAAGCGGCAGCCAATCCTGGATGCCATTGAAGCCAAGAAGAGGAGGCAACAGAACTTCTGA

Translation (487 aa):
METVQLRNPPRRQLKKLDEDSLTKQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEI
IKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYL
HFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSL
GITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFMDFVKQCLVKSPEQRATATQLLQHPF
VKSAKGVSILRDLINEAMDVKLKRQEAQQREVDQDDEENSEEDEMDSGTMVRAAGDEMGTVRVASTMSGG
ANTMIEHGDTLPSQLGTMVINTEDEEEEGTMKRRDETMQPAKPSFLEYFEQKEKENQINSFGKNVSGSLK
NSSDWKIPQDGDYEFLKSWTVEDLQKRLLALDPMMEQEMEEIRQKYRSKRQPILDAIEAKKRRQQNF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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