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Report for CCDS24861.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24861.2 Public Mus musculus 11 Usp43 23 108 98 CCDS HistoryNCBI Gene:216835Re-query CCDS DB by CCDS ID:24861.2Re-query CCDS DB by GeneID:216835See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 24861.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021288.9 ENSMUSP00000021288.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021288.9Link to Ensembl Protein Viewer:ENSMUSP00000021288.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000021288Re-query CCDS DB by Protein ID:ENSMUSP00000021288
Original member Current member NCBI NM_173754.4 NP_776115.2 Accepted alive Link to Nucleotide Sequence:NM_173754.4Link to Protein Sequence:NP_776115.2Re-query CCDS DB by Nucleotide ID:NM_173754Re-query CCDS DB by Protein ID:NP_776115Link to BLAST:NP_776115.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776115.2 1132 Q8BUM9-1 1132 100% 0 0

Chromosomal Locations for CCDS 24861.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 67855481 67856544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67875263 67875427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67876373 67876531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67879796 67880144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67880265 67880391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67881206 67881283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67883206 67883309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67887750 67887861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67891350 67891485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67893013 67893148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67897221 67897356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67898884 67898976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67904321 67904424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67913754 67913885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67921545 67922048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3399 nt):
ATGGATCCGGGCGTGGGGAACGCACTGGGAGAGGGGCCGCCCGCGCCCCGGCCCCGCCGCCGCCGTTCCC
TTCGCCGCCTGCTTAACCGCTTCCTGCTAGCTCTGGGCAGCCGCTCCCGCTCGGGGGACTCGCCGCCCCG
GCCCCCGGCCCAGCCCAGTCCCTACGATGGCGATGGAGAAGGGGGCTTTGCCTGCGCCCCGGGCCCGGCA
CCAGCCTCTGCCGGGAGTCCAGGGCCAGATCGTCCTCCGGGATCCCAACCCCAGATATCTTCGGGTGACG
GGGCGCGTCCGCCCGGCGCTCAGGGCTTGAAGAACCATGGCAACACCTGTTTCATGAACGCGGTGGTGCA
GTGTCTCAGCAACACCGACCTGCTGGCCGAGTTCCTAGCGCTGGGGCGCTACCGGGCGGCGCCGGGCCGC
GCCGAGGTCACCGAGCAGCTGGCGGCGCTGGTGCGCGCGCTCTGGACGCGCGAATACACGCCCCAACTTT
CCGCAGAGTTCAAGAATGCTGTTTCTAAGTATGGCTCCCAGTTCCAAGGCAATTCCCAGCACGATGCCCT
GGAATTCCTGCTCTGGCTTCTGGATCGTGTCCACGAGGACTTGGAAGGCTCAGCTCACGGGCTGGTATCT
GAGCAGCTGCCCCCAGAAGTGAGTAAGATCTCAGAGGACCTCCGGCCATCTGCAGCTCCTACCTCCTTAG
GGCCCAGCTTTGTGCAGAGCCACTTTCAAGCACAGTACAGGTCTTCCTTGACTTGTCCACACTGCCTAAA
ACAAAGCAACACCTTCGACCCTTTCCTGTGTGTGTCCCTTCCCATCCCCTTGCGCCAGACGAGATTCTTG
AGTGTCACTTTGGTGTTCCCCTCAAAGAGCCAGCGGTTTCTGCGTGTTGGCTTGGCCGTGCCAATCCTCA
GCACAGTGGCGGCCTTGAGGAAGATGGTTGCAGAGGAAGGAGGTGTCCCTGCAGAGGAGGTGATCTTGGT
TGAACTGTATCCCAATGGATTCCAGCGGTCATTCTTTGATGAAGAGGACCTGAATACCATTGCAGAGGGT
GACAATGTGTATGCTTTCCAAGTCCCTCCTTCACCTGGTCTGGGGACGCTCTCAGCCCATCCGTCTGGTC
TGTCAGTGTCACCGCGCTTGCCAGTCCGTGACAGCCAGCGATTCTCTGGGCCTCTCCACAGCGAGAACAG
GGTGGTCTTTCTCTTCTGTAACCTGGTGGGCTCAGGGCAGCAGGCGAGCAGGTTTGGACCACCGTTCTTG
ATTCGGGAAGATAGAACAATCTCCTGGGCCCAGCTTCAACAGTGTATTCTCAGCAAGGTTCGATGCCTCA
TGAGGAGTGAGGTCTCTGCACAGGACCTGGGGACTCTGTTCTCCATCCGGGTTGTGGGGCTCTCCTTGGC
CTGCAGCTACTTATCTCCAAAGGACAACCGGCCCCTTTGCCACTGGGCAGTTGACAGGGCTTTGCACCTC
AGGAGGCCAGGAGGCCCTCCTCATGTCAAGCTGGCTGTGGAATGGGACAGCTCTGTCACAGAGCGCCTGT
TTGGGAGCCTCCAGGAGGAACGGGTCCAGGATGCAGACAGTGTGTGGCGGCAGCAGCAGGCACACCAGCA
GCCCAGCTGTACCCTGGACGAATGTTTTCAGTCCTATACCAAGGAGGAACAGCTGGCCCAGGATGATGCA
TGGAAGTGCCCTCACTGCCAAGTCCTCCAGCAGGGTGTGGTCAAGCTGAGTCTGTGGACTCTGCCCGACA
TCCTGATCATCCATCTGAAACGGTTCTGTCAGGTGGGAGAGAGAAGGAACAAGCTCTCCACGCTGGTGAA
GTTCCCACTGTCTGGACTCAACATGGCTCCCCATGTAGCACGGAGGAGCACCAACTCCAAGGCGGGGCCC
GGCCCTTGGTCCTCCTGGAAGCAGCCGATCTGCCTCCCCACCACCTACCCGCTGGACTTCCTCTACGACT
TGTATGCTGTCTGCAACCACCATGGCAGTCTGCAAGGTGGGCATTACACAGCCTATTGCCGGAACTCCCT
GGACGGCCAGTGGTACAGCTATGACGACAGCACAGTGGAGGCCCTGCGAGAGGATGAGGTCAACACCAGG
GGGGCTTACATCCTATTCTACCAGAAGCGGAACAGCATCCCTCCCTGGTCAGCCAGCAGCTCCATGAGAG
GTTCCACCAGCTCCTCCTTGTCTGATCATTGGCTCATGAGACTCGGGAGCCTCAACAACAGCACAAGGGG
AAGCTTGCTGTCCTGGAGCTCGGCCCCCTGCCCCTCCATGGCCCGGGTACCCGACTCTCCTGTCTTCACC
AATGGTGTCTGCCACCAGGACAAGGGAGGAGTTGAGACCAGACCTTTGGTTCGGGGTGTTGGTGGCCGAA
GTATCAGCATGAAGGCATCTCCTGCTTCCCGATCCAGGCATGGGCCCTTCAAGACCATGCCCCTGAGGTG
GTCATTTGGACACAGGGAGAAACGTCCCGGGGCATCCGTTGAACTGGTGGAATACCTAGAGTCCAGAAGA
AGACCCCGTTCTACCAGCCAGTCCATTGTGCCGCTCTTGACTCGTGCTGCTGGTGGGGAAGAGACTTCAG
CGTCACCGAGGTCAGATGGCACCCTTCCTGCTAAAAGTGAAGACAGCGGTCGAGCCATTGGGCAAGGAAC
AACTGGGGTGCCCCTTTCCTCATGCCACCTCAACCACCATCCAGCCCTGGGGTCTTTAGATGACAGTCTG
CACACTGCCAGGACACGAACGGGGAATGTAAGTCAGGATATCAGGCTCCCAAAAAAGTTTGACCTGCCCC
TCACTGTGATGCCCTCAGTGGGGGATGAAAAGCCAGCTCGCCCTGAGGGCCAGAAGATGACACCTTGGAA
GGGAAGTAGCCAGGTGGGAAGCCAGAGTAGCCCACCTTCCCCCTCCACTGGCTTGCTTAGAAACTTTAAG
GACAGTGGCCCAGGTACCTTACCCAAGATGAAGTCTAAGGCTGCCATGGAGGAAAGGGCCCCTGACAAAG
ACAGGGGACAGGGGACATTCACTCTTTTGAAGTCTGTGTTTTGGAAGAAAGAACACAAGAGGACTGTCAG
GACTGAGAGCTCACCACCAGCACCCCCAATCTCCCTAGGGAGTGACCGGCTGAGCCCTGCTGCCATGAAT
GAGCAGGCCCTCAGGATTCGAGAGAGCCCAGCCAAGGGCCTGGGCAACCACATGGAGAGGGACATCAGAT
CTGCGCCCAGCTCTCTCCACCTCCCCCGAAAAGCCAGCAGGCCCCCTCGAGCCAGTACAGCTGGCACCTC
ACAAAGGACCATTCCTGGGGAACAGATTTCTTATGGCACCCTGCAGAGAGTGAAATACCACACCCTTTCC
TTAGGTCGAAAGAAATCCTTACCTGAGTCCAGCTTCTGA

Translation (1132 aa):
MDPGVGNALGEGPPAPRPRRRRSLRRLLNRFLLALGSRSRSGDSPPRPPAQPSPYDGDGEGGFACAPGPA
PASAGSPGPDRPPGSQPQISSGDGARPPGAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGR
AEVTEQLAALVRALWTREYTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSAHGLVS
EQLPPEVSKISEDLRPSAAPTSLGPSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRFL
SVTLVFPSKSQRFLRVGLAVPILSTVAALRKMVAEEGGVPAEEVILVELYPNGFQRSFFDEEDLNTIAEG
DNVYAFQVPPSPGLGTLSAHPSGLSVSPRLPVRDSQRFSGPLHSENRVVFLFCNLVGSGQQASRFGPPFL
IREDRTISWAQLQQCILSKVRCLMRSEVSAQDLGTLFSIRVVGLSLACSYLSPKDNRPLCHWAVDRALHL
RRPGGPPHVKLAVEWDSSVTERLFGSLQEERVQDADSVWRQQQAHQQPSCTLDECFQSYTKEEQLAQDDA
WKCPHCQVLQQGVVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNMAPHVARRSTNSKAGP
GPWSSWKQPICLPTTYPLDFLYDLYAVCNHHGSLQGGHYTAYCRNSLDGQWYSYDDSTVEALREDEVNTR
GAYILFYQKRNSIPPWSASSSMRGSTSSSLSDHWLMRLGSLNNSTRGSLLSWSSAPCPSMARVPDSPVFT
NGVCHQDKGGVETRPLVRGVGGRSISMKASPASRSRHGPFKTMPLRWSFGHREKRPGASVELVEYLESRR
RPRSTSQSIVPLLTRAAGGEETSASPRSDGTLPAKSEDSGRAIGQGTTGVPLSSCHLNHHPALGSLDDSL
HTARTRTGNVSQDIRLPKKFDLPLTVMPSVGDEKPARPEGQKMTPWKGSSQVGSQSSPPSPSTGLLRNFK
DSGPGTLPKMKSKAAMEERAPDKDRGQGTFTLLKSVFWKKEHKRTVRTESSPPAPPISLGSDRLSPAAMN
EQALRIRESPAKGLGNHMERDIRSAPSSLHLPRKASRPPRASTAGTSQRTIPGEQISYGTLQRVKYHTLS
LGRKKSLPESSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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