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Report for CCDS37893.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37893.1 Public Mus musculus 19 Capn1 23 108 98 CCDS HistoryNCBI Gene:12333Re-query CCDS DB by CCDS ID:37893.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37893.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025891.9 ENSMUSP00000025891.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025891.9Link to Ensembl Protein Viewer:ENSMUSP00000025891.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025891Re-query CCDS DB by Protein ID:ENSMUSP00000025891
Original member Current member EBI ENSMUST00000164843.7 ENSMUSP00000127498.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164843.7Link to Ensembl Protein Viewer:ENSMUSP00000127498.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164843Re-query CCDS DB by Protein ID:ENSMUSP00000127498
Original member NCBI NM_001110504.1 NP_001103974.1 Updated not alive Link to Nucleotide Sequence:NM_001110504.1Link to Protein Sequence:NP_001103974.1Re-query CCDS DB by Nucleotide ID:NM_001110504Re-query CCDS DB by Protein ID:NP_001103974
Current member NCBI NM_001110504.2 NP_001103974.1 Accepted alive Link to Nucleotide Sequence:NM_001110504.2Link to Protein Sequence:NP_001103974.1Re-query CCDS DB by Nucleotide ID:NM_001110504Re-query CCDS DB by Protein ID:NP_001103974Link to BLAST:NP_001103974.1
Original member NCBI NM_007600.3 NP_031626.1 Updated not alive Link to Nucleotide Sequence:NM_007600.3Link to Protein Sequence:NP_031626.1Re-query CCDS DB by Nucleotide ID:NM_007600Re-query CCDS DB by Protein ID:NP_031626
Current member NCBI NM_007600.4 NP_031626.1 Accepted alive Link to Nucleotide Sequence:NM_007600.4Link to Protein Sequence:NP_031626.1Re-query CCDS DB by Nucleotide ID:NM_007600Re-query CCDS DB by Protein ID:NP_031626Link to BLAST:NP_031626.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103974.1 713 O35350 713 100% 0 0
NP_031626.1 713 O35350 713 100% 0 0

Chromosomal Locations for CCDS 37893.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5989361 5989387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5989992 5990050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5990338 5990454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5991539 5991617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5991856 5991924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5992350 5992414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5993874 5993931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5994021 5994086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5994560 5994599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5994679 5994887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5996779 5996790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5997691 5997866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6007252 6007412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6007500 6007574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6008676 6008761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6009087 6009170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6011015 6011183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6011297 6011430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6013589 6013707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6013996 6014065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6014201 6014467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2142 nt):
ATGACAGAGGAGTTAATCACCCCTGTGTACTGCACCGGGGTGTCAGCCCAAGTACAGAAGAAGCGGGACA
AGGAGCTGGGCTTGGGCCGCCATGAAAACGCCATCAAGTACCTGGGCCAGGATTATGAAACGCTTCGGGC
AAGATGCCTGCAGAGTGGGGTCCTCTTCCAAGACGAGGCCTTCCCTCCGGTTTCTCATAGCCTGGGCTTC
AAGGAACTGGGTCCTCATTCCTCTAAAACCTATGGCATCAAATGGAAGCGGCCTACGGAACTGATGTCAA
ACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGGGGGACTGTTGGCT
CCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGC
TTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAGCTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCA
TAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTG
GAGCGCACTGCTGGAGAAAGCCTATGCTAAAGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACC
TCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACC
TCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAATATCTCCGATAT
CCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCGTACTCTGTGACGGGCGCCAAG
CAGGTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGA
AAGGACCCTGGAGTGACAGCTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGT
CAAGATGGAGGATGGGGAGTTCTGGATGTCGTTCCGAGACTTCATCCGTGAATTCACCAAACTGGAAATC
TGCAACCTTACACCGGACGCCCTTAAGAGCAGGACCCTCCGGAATTGGAATACCACATTTTACGAGGGCA
CCTGGCGTCGGGGAAGCACCGCTGGAGGCTGCAGGAACTACCCAGCTACCTTCTGGGTAAACCCCCAGTT
CAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTG
CTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTG
CAGTGTACCAGGTCCCTCGGGAGCTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAA
CGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCC
GGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCT
CAGAGAAGAAGGCTGGGACCCAGGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAGAAAGTTCT
CTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGATGACATGGAGATC
AGCGTCAAGGAGCTACAGACCATCTTGAACAGGATCATTAGCAAACACAAAGACCTGCGCACTAATGGCT
TCAGCCTGGAGTCGTGCCGCAGCATGGTGAACCTCATGGATCGAGATGGCAACGGGAAGCTGGGTCTGGT
GGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTGACCATCTTCCGGAAGTTTGACCTGGACAAG
TCTGGCAGCATGAGTGCCTATGAGATGAGGATGGCCATCGAGGCTGCAGGCTTCAAGCTTAACAAGAAGC
TGCATGAACTCATAATCACCCGCTACTCGGAGCCCGACCTGGCCGTGGACTTTGACAACTTTGTGTGCTG
TCTTGTGCGGCTGGAGACCATGTTCCGGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACC
TTTGATCTATTTAAGTGGCTCCAGCTGACTATGTTTGCCTGA

Translation (713 aa):
MTEELITPVYCTGVSAQVQKKRDKELGLGRHENAIKYLGQDYETLRARCLQSGVLFQDEAFPPVSHSLGF
KELGPHSSKTYGIKWKRPTELMSNPQFIVDGATRTDICQGALGDCWLLAAIASLTLNETILHRVVPYGQS
FQDGYAGIFHFQLWQFGEWVDVVIDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGGCT
SEAFEDFTGGVTEWYDLQKAPSDLYQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGHAYSVTGAK
QVTYQGQRVNLIRMRNPWGEVEWKGPWSDSSYEWNKVDPYEREQLRVKMEDGEFWMSFRDFIREFTKLEI
CNLTPDALKSRTLRNWNTTFYEGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDADDYDNRESGCSFL
LALMQKHRRRERRFGRDMETIGFAVYQVPRELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRLPP
GEYIVVPSTFEPNKEGDFLLRFFSEKKAGTQELDDQIQANLPDEKVLSEEEIDDNFKTLFSKLAGDDMEI
SVKELQTILNRIISKHKDLRTNGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLTIFRKFDLDK
SGSMSAYEMRMAIEAAGFKLNKKLHELIITRYSEPDLAVDFDNFVCCLVRLETMFRFFKLLDTDLDGVVT
FDLFKWLQLTMFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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