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Report for CCDS17248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17248.1 Public Mus musculus 3 Car1 23 108 98 CCDS HistoryNCBI Gene:12346Re-query CCDS DB by CCDS ID:17248.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17248.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094365.10 ENSMUSP00000091925.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094365.10Link to Ensembl Protein Viewer:ENSMUSP00000091925.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094365Re-query CCDS DB by Protein ID:ENSMUSP00000091925
Original member Current member EBI ENSMUST00000181860.7 ENSMUSP00000137926.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000181860.7Link to Ensembl Protein Viewer:ENSMUSP00000137926.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000181860Re-query CCDS DB by Protein ID:ENSMUSP00000137926
Original member Current member NCBI NM_001083957.1 NP_001077426.1 Accepted alive Link to Nucleotide Sequence:NM_001083957.1Link to Protein Sequence:NP_001077426.1Re-query CCDS DB by Nucleotide ID:NM_001083957Re-query CCDS DB by Protein ID:NP_001077426Link to BLAST:NP_001077426.1
Original member Current member NCBI NM_009799.4 NP_033929.2 Accepted alive Link to Nucleotide Sequence:NM_009799.4Link to Protein Sequence:NP_033929.2Re-query CCDS DB by Nucleotide ID:NM_009799Re-query CCDS DB by Protein ID:NP_033929Link to BLAST:NP_033929.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077426.1 261 P13634 261 100% 0 0
NP_033929.2 261 P13634 261 100% 0 0

Chromosomal Locations for CCDS 17248.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 14766536 14766652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14767404 14767559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14770171 14770233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14770808 14770903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14776218 14776336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14777729 14777926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14778348 14778384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGGCAAGTGCAGACTGGGGATATGGAAGCGAAAATGGTCCTGACCAATGGAGCAAGCTGTATCCCATTG
CCAATGGAAACAACCAGTCTCCTATTGATATTAAAACCAGTGAAGCCAATCATGACTCCTCTCTGAAACC
ACTCAGCATCTCCTATAATCCTGCAACTGCCAAAGAAATTGTTAACGTGGGACATTCTTTCCATGTAATT
TTTGATGACAGTAGCAACCAATCTGTTCTGAAAGGTGGCCCTCTTGCTGATAGCTATCGGCTCACTCAGT
TCCATTTTCACTGGGGCAACTCAAACGACCATGGCTCTGAGCACACCGTGGATGGAACTAGATATTCTGG
AGAGCTTCACTTAGTTCACTGGAATTCTGCAAAGTACTCCAGTGCTTCTGAAGCCATCTCCAAGGCTGAT
GGCCTGGCAATCCTTGGCGTTTTGATGAAGGTTGGTCCAGCCAACCCAAGCCTGCAGAAAGTACTTGATG
CTCTAAACTCAGTTAAAACTAAGGGAAAACGAGCCCCATTCACAAATTTTGACCCATCCAGTCTGCTTCC
TTCATCTCTGGATTACTGGACCTACTTTGGCTCTCTGACTCACCCTCCTCTTCATGAAAGTGTGACCTGG
GTGATCTGCAAGGATAGCATCAGTCTAAGCCCAGAGCAGCTGGCCCAGCTCCGTGGTCTTCTGTCAAGTG
CAGAGGGAGAGCCTGCAGTTCCAGTTCTGAGCAACCACCGTCCACCCCAACCCCTGAAGGGCAGAACAGT
CAGAGCCTCATTTTGA

Translation (261 aa):
MASADWGYGSENGPDQWSKLYPIANGNNQSPIDIKTSEANHDSSLKPLSISYNPATAKEIVNVGHSFHVI
FDDSSNQSVLKGGPLADSYRLTQFHFHWGNSNDHGSEHTVDGTRYSGELHLVHWNSAKYSSASEAISKAD
GLAILGVLMKVGPANPSLQKVLDALNSVKTKGKRAPFTNFDPSSLLPSSLDYWTYFGSLTHPPLHESVTW
VICKDSISLSPEQLAQLRGLLSSAEGEPAVPVLSNHRPPQPLKGRTVRASF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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