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Report for CCDS25190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25190.1 Public Mus musculus 11 Car4 23 108 98 CCDS HistoryNCBI Gene:12351Re-query CCDS DB by CCDS ID:25190.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25190.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103194.9 ENSMUSP00000099483.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103194.9Link to Ensembl Protein Viewer:ENSMUSP00000099483.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103194Re-query CCDS DB by Protein ID:ENSMUSP00000099483
Original member NCBI NM_007607.2 NP_031633.1 Updated not alive Link to Nucleotide Sequence:NM_007607.2Link to Protein Sequence:NP_031633.1Re-query CCDS DB by Nucleotide ID:NM_007607Re-query CCDS DB by Protein ID:NP_031633
Current member NCBI NM_007607.3 NP_031633.1 Accepted alive Link to Nucleotide Sequence:NM_007607.3Link to Protein Sequence:NP_031633.1Re-query CCDS DB by Nucleotide ID:NM_007607Re-query CCDS DB by Protein ID:NP_031633Link to BLAST:NP_031633.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031633.1 305 Q64444 305 100% 0 0

Chromosomal Locations for CCDS 25190.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 84957887 84957941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84962386 84962439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84963338 84963493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84964093 84964238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84964348 84964428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84964535 84964601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84964713 84964876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 84965611 84965805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGCAGCTCCTTCTTGCTCTGCTGGCGCTGGCATACGTGGCCCCCTCTACTGAAGACTCAGGCTGGTGCT
ATGAGATTCAAACCAAGGATCCTAGAAGCAGTTGCTTGGGGCCTGAGAAGTGGCCTGGAGCCTGTAAGGA
GAATCAGCAGTCCCCCATCAACATTGTCACTGCTAGGACAAAGGTGAACCCCAGACTGACACCCTTCATC
CTCGTCGGCTATGACCAAAAGCAACAGTGGCCAATTAAGAACAATCAACACACAGTGGAGATGACGCTGG
GGGGAGGTGCGTGCATTATCGGAGGAGACCTGCCCGCCCGGTACGAGGCTGTACAGTTGCACCTGCACTG
GTCAAATGGGAATGACAACGGTTCAGAGCACAGTATTGATGGGAGACACTTTGCCATGGAGATGCACATC
GTGCACAAGAAGTTGACATCTAGCAAGGAGGACTCGAAGGACAAGTTTGCAGTGCTGGCATTTATGATTG
AGGTAGGAGACAAGGTGAACAAGGGCTTCCAGCCCCTGGTGGAAGCACTGCCCAGTATCTCCAAACCCCA
TTCAACCTCTACAGTGAGGGAGAGCAGTTTGCAGGACATGCTTCCCCCGAGCACCAAAATGTATACCTAC
TTCCGTTACAATGGCTCACTAACCACACCAAACTGTGATGAGACTGTCATCTGGACTGTGTACAAACAAC
CCATCAAGATCCACAAAAACCAGTTCCTGGAATTCTCAAAAAATCTGTACTATGACGAAGATCAGAAGTT
GAACATGAAGGACAATGTGAGGCCCCTGCAGCCGCTGGGAAAACGCCAGGTGTTCAAGTCCCATGCCCCA
GGACAGCTGCTGTCTTTGCCCCTGCCCACTCTGTTGGTCCCCACACTCACCTGCCTGGTAGCCAACTTCC
TCCAGTAA

Translation (305 aa):
MQLLLALLALAYVAPSTEDSGWCYEIQTKDPRSSCLGPEKWPGACKENQQSPINIVTARTKVNPRLTPFI
LVGYDQKQQWPIKNNQHTVEMTLGGGACIIGGDLPARYEAVQLHLHWSNGNDNGSEHSIDGRHFAMEMHI
VHKKLTSSKEDSKDKFAVLAFMIEVGDKVNKGFQPLVEALPSISKPHSTSTVRESSLQDMLPPSTKMYTY
FRYNGSLTTPNCDETVIWTVYKQPIKIHKNQFLEFSKNLYYDEDQKLNMKDNVRPLQPLGKRQVFKSHAP
GQLLSLPLPTLLVPTLTCLVANFLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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