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Report for CCDS28154.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28154.1 Public Mus musculus 16 Casr 23 108 98 CCDS HistoryNCBI Gene:12374Re-query CCDS DB by CCDS ID:28154.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28154.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063597.13 ENSMUSP00000069080.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063597.13Link to Ensembl Protein Viewer:ENSMUSP00000069080.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000063597Re-query CCDS DB by Protein ID:ENSMUSP00000069080
Original member Current member EBI ENSMUST00000172826.1 ENSMUSP00000133500.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172826.1Link to Ensembl Protein Viewer:ENSMUSP00000133500.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172826Re-query CCDS DB by Protein ID:ENSMUSP00000133500
Original member Current member NCBI NM_013803.3 NP_038831.2 Accepted alive Link to Nucleotide Sequence:NM_013803.3Link to Protein Sequence:NP_038831.2Re-query CCDS DB by Nucleotide ID:NM_013803Re-query CCDS DB by Protein ID:NP_038831Link to BLAST:NP_038831.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038831.2 1079 Q9QY96-1 1079 100% 0 0

Chromosomal Locations for CCDS 28154.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 36494467 36495974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36497590 36497713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36500177 36500407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36509594 36510478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36515454 36515760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36517602 36517786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3240 nt):
ATGGCATGGTTTGGCTACTGTTTGGCCCTCCTGGCTCTCACCTGGCACTCCTCTGCCTATGGGCCTGACC
AGCGAGCCCAAAAGAAGGGGGACATTATCCTAGGAGGTCTCTTTCCTATCCATTTTGGAGTAGCAGCCAA
AGATCAAGATCTGAAGTCAAGACCAGAGTCTGTGGAGTGCATCAGGTATAACTTCCGTGGATTCCGATGG
TTACAAGCCATGATCTTTGCCATAGAGGAGATAAACAGCAGCCCCGCCCTTCTTCCCAACATGACTCTGG
GATATAGGATATTCGACACCTGTAACACCGTCTCCAAGGCTCTGGAGGCCACCTTGAGTTTTGTTGCCCA
GAACAAAATCGATTCTCTGAACCTGGATGAGTTCTGCAACTGCTCCGAGCACATCCCTTCAACCATCGCA
GTGGTGGGAGCAACCGGCTCCGGTGTCTCCACAGCGGTAGCCAACCTGCTGGGACTTTTCTATATCCCCC
AGGTGAGCTACGCCTCCTCTAGCAGGCTTCTCAGCAATAAGAACCAGTTCAAGTCCTTCCTCCGCACCAT
TCCCAACGACGAACACCAGGCCACCGCGATGGCTGACATTATCGAGTATTTCCGTTGGAACTGGGTGGGC
ACAATTGCAGCCGACGACGACTATGGCAGGCCTGGCATTGAGAAGTTCCGAGAGGAAGCCGAGGAGAGGG
ACATCTGCATTGACTTCAGCGAGCTCATCTCCCAGTACTCTGATGAGGAAGAGATCCAGCAGGTGGTGGA
AGTGATCCAGAACTCTACAGCCAAGGTCATTGTCGTTTTCTCCAGCGGCCCAGACCTAGAACCTCTCATC
AAGGAGATTGTGCGCCGTAACATCACAGGCAGGATCTGGCTGGCCAGCGAGGCCTGGGCCAGTTCCTCCC
TGATTGCTATGCCTGAGTACTTCCATGTAGTCGGGGGTACCATTGGGTTCGGTCTGAAGGCTGGGCAGAT
TCCAGGCTTCCGAGAATTCCTACAGAAAGTCCATCCCAGGAAGTCTGTCCACAATGGTTTTGCCAAAGAG
TTTTGGGAAGAAACATTTAATTGCCACCTGCAAGACGGCGCAAAAGGACCTTTACCCGTGGACACCTTCG
TGAGAAGTCACGAGGAAGGCGGCAACAGGTTACTCAATAGCTCCACTGCCTTCCGACCCCTCTGCACGGG
GGATGAAAACATCAATAGTGTCGAGACCCCTTACATGGACTACGAACATTTACGGATATCCTACAACGTG
TACTTAGCCGTCTACTCCATTGCGCACGCCCTGCAAGATATATACACCTGCTTACCCGGAAGAGGGCTTT
TCACCAACGGGTCCTGTGCAGACATCAAGAAGGTTGAGGCCTGGCAGGTCCTGAAACACCTACGGCACCT
GAATTTCACCAACAACATGGGGGAGCAGGTGACCTTCGATGAGTGCGGTGACCTGGTGGGGAACTACTCC
ATCATCAACTGGCACCTCTCCCCAGAGGACGGCTCCATTGTGTTCAAGGAAGTTGGGTACTACAATGTGT
ATGCCAAGAAGGGAGAAAGACTGTTCATCAATGAGGGGAAGATCTTGTGGAGTGGGTTCTCCAGAGAGGT
GCCCTTCTCCAACTGCAGCCGGGACTGTCAGGCAGGGACCAGGAAGGGCATCATTGAGGGAGAGCCCACC
TGCTGTTTTGAGTGTGTGGAGTGTCCTGACGGCGAGTACAGTGGTGAGACAGATGCGAGTGCCTGTGACA
AGTGCCCGGATGACTTCTGGTCCAATGAGAACCACACTTCCTGCATTGCCAAGGAGATTGAGTTCCTGGC
GTGGACTGAGCCCTTTGGAATCGCTCTCACTCTCTTTGCGGTGCTGGGCATTTTCCTGACCGCCTTTGTG
CTGGGCGTCTTCATCAAGTTCCGAAACACGCCCATTGTCAAGGCCACCAACCGAGAGCTGTCCTACCTCC
TGCTCTTCTCACTCCTCTGCTGCTTCTCCAGCTCCCTGTTCTTCATTGGGGAGCCCCAGGACTGGACCTG
CCGCCTGCGACAGCCCGCCTTCGGCATCAGCTTCGTGCTTTGTATCTCGTGCATCTTGGTGAAGACCAAT
CGAGTCCTCCTGGTATTTGAGGCCAAAATACCCACCAGCTTCCACCGGAAGTGGTGGGGACTCAACCTGC
AGTTCCTGCTGGTTTTCCTCTGCACCTTCATGCAGATTGTCATCTGCATCATCTGGCTCTACACGGCACC
CCCCTCCAGCTACCGCAACCACGAGCTGGAAGACGAAATCATCTTCATCACGTGCCATGAGGGCTCACTC
ATGGCGCTCGGCTCCCTGATCGGCTACACCTGCCTCCTGGCTGCCATCTGCTTCTTCTTTGCCTTCAAGT
CTCGGAAGCTGCCAGAGAACTTCAACGAAGCCAAGTTCATTACCTTCAGCATGCTCATCTTCTTCATCGT
CTGGATCTCCTTCATTCCAGCCTATGCCAGCACCTACGGCAAGTTTGTCTCTGCCGTGGAGGTGATCGCC
ATCCTGGCAGCCAGCTTTGGCTTGCTAGCCTGCATCTTCTTCAACAAGGTCTACATCATCCTCTTCAAGC
CTTCACGGAACACCATCGAGGAGGTGCGCTCCAGCACTGCGGCTCATGCTTTCAAAGTGGCAGCCCGCGC
CACTCTACGCCGCCCCAACATCTCCCGGAAGCGGTCCAGCAGCCTCGGAGGCTCCACTGGGTCGATTCCC
TCCTCCTCCATCAGCAGCAAAAGCAACAGCGAAGACCGGTTCCCACAGCCGGAGAGGCAGAAGCAACAGC
AACCACTGGCCCTGACCCAGCAAGAACAGCAGCAGCAGCCCCTGACTCTCCAGCCGCAGCAACAGCAACA
GCCACAGCAGCCGAGATGCAAACAGAAGGTCATCTTCGGCAGTGGCACAGTCACCTTCTCTCTGAGCTTT
GATGAGCCTCAGAAGAATGCTATGGCCCACAGGAACTCCATGCGCCAGAACTCCCTGGAGGCCCAGAAGA
GCAATGACACTTTGAACAGACACCAGGCCCTGCTTCCCCTACAGTGTGCAGAGGCGGACTCAGAAATGAC
CATTCAGGAGACGGGCTTGCAAGGGCCAATGGTGGGGGACCACCAGCCAGAAATAGAAAGCCCAGATGAA
ATGTCCCCAGCTCTGGTCATGTCCACCTCTCGGAGCTTCGTCATCAGCGGTGGAGGTAGCTCTGTGACGG
AAAACATACTGCACTCCTAA

Translation (1079 aa):
MAWFGYCLALLALTWHSSAYGPDQRAQKKGDIILGGLFPIHFGVAAKDQDLKSRPESVECIRYNFRGFRW
LQAMIFAIEEINSSPALLPNMTLGYRIFDTCNTVSKALEATLSFVAQNKIDSLNLDEFCNCSEHIPSTIA
VVGATGSGVSTAVANLLGLFYIPQVSYASSSRLLSNKNQFKSFLRTIPNDEHQATAMADIIEYFRWNWVG
TIAADDDYGRPGIEKFREEAEERDICIDFSELISQYSDEEEIQQVVEVIQNSTAKVIVVFSSGPDLEPLI
KEIVRRNITGRIWLASEAWASSSLIAMPEYFHVVGGTIGFGLKAGQIPGFREFLQKVHPRKSVHNGFAKE
FWEETFNCHLQDGAKGPLPVDTFVRSHEEGGNRLLNSSTAFRPLCTGDENINSVETPYMDYEHLRISYNV
YLAVYSIAHALQDIYTCLPGRGLFTNGSCADIKKVEAWQVLKHLRHLNFTNNMGEQVTFDECGDLVGNYS
IINWHLSPEDGSIVFKEVGYYNVYAKKGERLFINEGKILWSGFSREVPFSNCSRDCQAGTRKGIIEGEPT
CCFECVECPDGEYSGETDASACDKCPDDFWSNENHTSCIAKEIEFLAWTEPFGIALTLFAVLGIFLTAFV
LGVFIKFRNTPIVKATNRELSYLLLFSLLCCFSSSLFFIGEPQDWTCRLRQPAFGISFVLCISCILVKTN
RVLLVFEAKIPTSFHRKWWGLNLQFLLVFLCTFMQIVICIIWLYTAPPSSYRNHELEDEIIFITCHEGSL
MALGSLIGYTCLLAAICFFFAFKSRKLPENFNEAKFITFSMLIFFIVWISFIPAYASTYGKFVSAVEVIA
ILAASFGLLACIFFNKVYIILFKPSRNTIEEVRSSTAAHAFKVAARATLRRPNISRKRSSSLGGSTGSIP
SSSISSKSNSEDRFPQPERQKQQQPLALTQQEQQQQPLTLQPQQQQQPQQPRCKQKVIFGSGTVTFSLSF
DEPQKNAMAHRNSMRQNSLEAQKSNDTLNRHQALLPLQCAEADSEMTIQETGLQGPMVGDHQPEIESPDE
MSPALVMSTSRSFVISGGGSSVTENILHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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