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Report for CCDS38153.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38153.1 Public Mus musculus 2 Pjvk 23 108 98 CCDS HistoryNCBI Gene:381375Re-query CCDS DB by CCDS ID:38153.1Re-query CCDS DB by GeneID:381375See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38153.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099986.2 ENSMUSP00000097566.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099986.2Link to Ensembl Protein Viewer:ENSMUSP00000097566.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099986Re-query CCDS DB by Protein ID:ENSMUSP00000097566
Original member Current member NCBI NM_001080711.2 NP_001074180.1 Accepted alive Link to Nucleotide Sequence:NM_001080711.2Link to Protein Sequence:NP_001074180.1Re-query CCDS DB by Nucleotide ID:NM_001080711Re-query CCDS DB by Protein ID:NP_001074180Link to BLAST:NP_001074180.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074180.1 352 Q0ZLH2 352 100% 0 0

Chromosomal Locations for CCDS 38153.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 76650422 76650632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76651398 76651593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76652194 76652335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76655807 76655924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76657433 76657531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76658253 76658545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGTTTGCTGCTGCTACCAAGAGCTTCGTTAAGCAAGTTGGAGATGGAGGGAGATTAGTCCCTGTCCCAA
GCCTCAGCGAAGCTGACAAGTACCAACCCCTGAGTCTGGTGGTGAAAAAGAAGCGGTGTTTTCTGTTTCC
TAGATGCAAATTCACATCCACTCCTTTCACACTTAAAGATATTCTCCTGGGAGATCGAGAAATTTCAGCT
GGAATTTCATCTTATCAGTTACTGAATTATGAAGATGAGTCAGATGTTTCCCTCTATGGAAGGCGAAGCA
ACCATATTGTGAATGACGTGGGGATTAATGTCACTGGATCTGATTCCATCGCAGTCAAAGCTTCATTTGG
TGTCGTGACCAAACATGAGGTGGAAGTTTCGACATTACTCAAGGAGATTACTGCACGAAAAATTAACTTT
GACCACAGTTTGATCCGCCAATCAAGGAGCAGCAGGAAGGCGGTGCTGTGCGTGGTCATGGAGAGCATCC
GAACCACACGCCAGTGCTCTCTGTCAGTGCACGCTGGGATTCGTGGGGAAGCCATGCGGTTTCATTTTAT
GGATGAACAGAATCCCAAGGGAAGGGAAAAGGCTATTGTTTTCCCAGCACACACAACTATAGCTTTCAGT
GTTTTTGAGCTCTTCATCTACCTGGACGGTGCCTTCGACATTTGTGTCACATCTGTGTCAAAAGGAGGAT
TTGAAAGGGAAGAAACGACAACCTTTGCCATGTTCTACAGACTGAGAAATATACTCTTCGAAAGAAACAG
GAGAGTGATGGACGCCATCTCTCGTTCCCAGCTTTACCTGGACGACCTCTTTTCTGACTTCTACGACAAA
CCCCTCAGCATGACTGACATTTCCCTCAAGGAGGGGACTCACATCCGAGTGAACTTACTAAACCACAACA
TTCCTAAAGGGCCCTGCATCCTCTGCGGAATGGGGAACTTGAAAAGGGAGACGGTCTACGGCTGCTTCCA
GTGTTCTGTGGACGGCGTGAAGTACGTGCGTCTTCACGCAGTCCCTTGCTTTGATATCTGGCACAAGAGA
ATGAAATAA

Translation (352 aa):
MFAAATKSFVKQVGDGGRLVPVPSLSEADKYQPLSLVVKKKRCFLFPRCKFTSTPFTLKDILLGDREISA
GISSYQLLNYEDESDVSLYGRRSNHIVNDVGINVTGSDSIAVKASFGVVTKHEVEVSTLLKEITARKINF
DHSLIRQSRSSRKAVLCVVMESIRTTRQCSLSVHAGIRGEAMRFHFMDEQNPKGREKAIVFPAHTTIAFS
VFELFIYLDGAFDICVTSVSKGGFEREETTTFAMFYRLRNILFERNRRVMDAISRSQLYLDDLFSDFYDK
PLSMTDISLKEGTHIRVNLLNHNIPKGPCILCGMGNLKRETVYGCFQCSVDGVKYVRLHAVPCFDIWHKR
MK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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