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Report for CCDS38010.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38010.1 Public Mus musculus 19 Arl3 23 108 98 CCDS HistoryNCBI Gene:56350Re-query CCDS DB by CCDS ID:38010.1Re-query CCDS DB by GeneID:56350See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38010.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026009.9 ENSMUSP00000026009.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026009.9Link to Ensembl Protein Viewer:ENSMUSP00000026009.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000026009Re-query CCDS DB by Protein ID:ENSMUSP00000026009
Original member Current member NCBI NM_019718.3 NP_062692.1 Accepted alive Link to Nucleotide Sequence:NM_019718.3Link to Protein Sequence:NP_062692.1Re-query CCDS DB by Nucleotide ID:NM_019718Re-query CCDS DB by Protein ID:NP_062692Link to BLAST:NP_062692.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062692.1 182 Q9WUL7 182 100% 0 0

Chromosomal Locations for CCDS 38010.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46531339 46531386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46542352 46542537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46543482 46543532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46551573 46551689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46558238 46558381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46573040 46573042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (549 nt):
ATGGGCTTGCTCTCTATTTTGCGCAAATTGAAAAGTGCACCAGACCAGGAGGTGCGAATCCTACTCCTGG
GCTTGGACAACGCGGGCAAGACTACCTTGCTGAAGCAACTCGCATCTGAAGACATCAGCCACATCACACC
TACACAGGGATTTAACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTGAATGTATGGGACATTGGCGGG
CAGAGGAAAATCAGACCATACTGGAGAAGTTATTTTGAAAATACTGATATTCTCATCTATGTAATTGACA
GTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAGGAACTAACGGAATTACTGGAGGAAGAAAAGCTGAG
TTGTGTGCCCGTGCTCATCTTTGCTAACAAGCAGGACCTGCTCACGGCAGCCCCAGCCTCCGAGATCGCA
GAAGGGCTAAACCTCCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGTTCAGCGCTCACAGGCG
AGGGCGTCCAGGATGGCATGAACTGGGTCTGCAAGAATGTCAACGCAAAGAAGAAATAA

Translation (182 aa):
MGLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGG
QRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIA
EGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKKK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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