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Report for CCDS38855.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38855.1 Public Mus musculus 4 Or13p3 23 108 98 CCDS HistoryNCBI Gene:258852Re-query CCDS DB by CCDS ID:38855.1Re-query CCDS DB by GeneID:258852See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38855.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061215.5 ENSMUSP00000095523.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061215.5Link to Ensembl Protein Viewer:ENSMUSP00000095523.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000061215Re-query CCDS DB by Protein ID:ENSMUSP00000095523
Original member Current member EBI ENSMUST00000215117.2 ENSMUSP00000149466.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215117.2Link to Ensembl Protein Viewer:ENSMUSP00000149466.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215117Re-query CCDS DB by Protein ID:ENSMUSP00000149466
Original member Current member EBI ENSMUST00000214131.1 ENSMUSP00000151040.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214131.1Link to Ensembl Protein Viewer:ENSMUSP00000151040.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214131Re-query CCDS DB by Protein ID:ENSMUSP00000151040
Original member Current member NCBI NM_146853.2 NP_667064.2 Accepted alive Link to Nucleotide Sequence:NM_146853.2Link to Protein Sequence:NP_667064.2Re-query CCDS DB by Nucleotide ID:NM_146853Re-query CCDS DB by Protein ID:NP_667064Link to BLAST:NP_667064.2

Chromosomal Locations for CCDS 38855.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 118709409 118710347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGCAAGGTCCCAATCAGACCTTTGTGACAGAATTCATCCTTCTGGGCTTCTCCCTGAGCCCTAGGACCA
CACCTCTTCTCTTCTCAGCCTTTCTGATAATTTACTTGTTGATCATTCTGGGCAATGGCTTGATCTTCAT
CCTCATCTGCTTGGACTCACACCTCCATACCCCCATGTATTTCTTCATTGGTGTTCTTTCCATGTTGGAC
TTAGGCTACACCACCACAACTGTGCCCCAGATGTTGGCACATCTGGCCAGCCAGAAGAAGACAATCTCTT
ACTCCAATTGTGTGGCTCAAATGTACATTTTTTTGGTGCTGGGTGTCACAGAGTCTTGGCTTTTTGCCAT
CATGTCCATAGACAGGTATGTGGCCATCTGCCACCCACTCAGGTACAAGGTCATCATGAGCCCATGTCTA
TGTGGGGTAATGGCTATTTTCTGTGGACTCTGTGGTGTCACCGCTGCTCTTGTCTATACCATCTTTGCCA
TGCGCCTCCCCTACTGTGGCCCCAACAAGATCAACCACTTCTTCTGTGAAGTCCCTGCAGTCTTAAAGCT
GGCTTGTGCAGATACATCAGTCAATGACCATGTGGACTTCATACTTGGGTTTAGTGTCATACTGATCCCC
CTGTCCCTTATCCTGGTCATCTATATCAACATTTTCACTTCCATCTTGAAGATCCGTTCAGCACAGGGGC
GACTGAAAGCCTTCTCCACCTGTGCATCCCACATCACTGTGGTCACCATGTTCTGTGTGCCAGCCATGGT
CATGTACATGAAGCCTGGTTCTAAAGCCTCCCCAGAAGAGGACAAGAAGCTTGCCCTATTCTACAATGTC
ATCTCTGCCTTTCTCAACCCTGTCATCTATAGTCTCCGGAACAAGGATGTGAAGAGGGCTTTCCTCAAGG
TAACAGGCTGTGGTAGACCCCCAGAATGA

Translation (312 aa):
MQGPNQTFVTEFILLGFSLSPRTTPLLFSAFLIIYLLIILGNGLIFILICLDSHLHTPMYFFIGVLSMLD
LGYTTTTVPQMLAHLASQKKTISYSNCVAQMYIFLVLGVTESWLFAIMSIDRYVAICHPLRYKVIMSPCL
CGVMAIFCGLCGVTAALVYTIFAMRLPYCGPNKINHFFCEVPAVLKLACADTSVNDHVDFILGFSVILIP
LSLILVIYINIFTSILKIRSAQGRLKAFSTCASHITVVTMFCVPAMVMYMKPGSKASPEEDKKLALFYNV
ISAFLNPVIYSLRNKDVKRAFLKVTGCGRPPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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