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Report for CCDS50493.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50493.1 Public Mus musculus 2 Celf2 23 108 98 CCDS HistoryNCBI Gene:14007Re-query CCDS DB by CCDS ID:50493.1Re-query CCDS DB by GeneID:14007See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50493.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170438.7 ENSMUSP00000130829.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170438.7Link to Ensembl Protein Viewer:ENSMUSP00000130829.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170438Re-query CCDS DB by Protein ID:ENSMUSP00000130829
Original member Current member NCBI NM_010160.2 NP_034290.2 Accepted alive Link to Nucleotide Sequence:NM_010160.2Link to Protein Sequence:NP_034290.2Re-query CCDS DB by Nucleotide ID:NM_010160Re-query CCDS DB by Protein ID:NP_034290Link to BLAST:NP_034290.2

Chromosomal Locations for CCDS 50493.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 6547086 6547213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6553785 6553964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6560671 6560790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6585974 6586108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6600034 6600097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6604024 6604182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6607882 6607961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6615688 6615822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6624671 6624719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6664115 6664197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6721417 6721613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6884852 6884958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGTTTGAGCGCACTTCTGAACTGGCTTTTGTTGAGACTATCAGTGTAGAAAGCATGCGCTGTCCCAAAT
CCGCTGTTACTATGAGAAATGAGGAGCTGCTTTTAAGTAACGGCACAGCCAACAAGATGAACGGAGCTTT
GGATCATTCAGACCAGCCAGACCCAGATGCCATTAAGATGTTTGTCGGACAGATCCCTAGGTCCTGGTCG
GAAAAGGAGCTGAAAGAACTTTTTGAGCCTTATGGAGCTGTCTACCAGATCAACGTCCTCCGGGACCGGA
GTCAGAACCCTCCCCAGAGTAAAGGTTGTTGTTTCGTAACATTTTATACAAGAAAAGCTGCACTTGAGGC
CCAGAATGCACTGCACAATATTAAAACTTTACCTGGGATGCATCATCCCATTCAGATGAAACCTGCAGAT
AGTGAAAAGTCAAACGCTGTGGAAGACAGAAAATTGTTCATAGGAATGGTTTCCAAGAAATGTAACGAGA
ATGATATCAGAGTGATGTTTTCTCCATTCGGTCAGATAGAAGAATGCCGGATTCTCCGGGGACCTGATGG
GCTGAGTCGAGGCTGTGCGTTTGTCACATTTTCTACAAGGGCAATGGCACAGAATGCAATCAAAGCCATG
CATCAGTCTCAGACCATGGAGGGCTGCTCTTCACCAATCGTGGTGAAGTTTGCTGACACTCAGAAGGACA
AAGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCAGATGCAACAGCTCAACACTGCCACTTGGGGGAA
CCTAACAGGACTGGGTGGACTTACCCCGCAGTACCTGGCGCTTCTGCAGCAGGCCACCTCCTCCAGCAAC
CTGGGTGCATTCAGTGGCATTCAGCAAATGGCTGGCATGAATGCTTTACAGTTACAGAATCTGGCAACAC
TGGCTGCTGCTGCAGCTGCTGCTCAAACCTCAGCCACCAGCACCAATGCAAACCCTCTGTCTAGCACAAG
CAGTGCCCTGGGAGCCCTCACAAGCCCTGTGGCTGCTTCAACCCCCAATTCCACCGCTGGTGCGGCCATG
AATTCCTTGACCTCTCTTGGGACTCTACAAGGATTGGCTGGAGCCACTGTCGGATTGAATAATATTAATG
CACTAGCAGGTATGGCGGCTCTGAATGGAGGACTTGGCGCCACAGGCTTGACGAATGGTACGGCTGGCAC
CATGGACGCCCTGACCCAGGCCTACTCAGGAATTCAGCAGTATGCGGCAGCTGCACTGCCCACTTTGTAC
AGCCAGAGCTTGCTGCAACAGCAGAGTGCTGCAGGCAGCCAGAAGGAAGGTTTTGTTAGCTATGACAATC
CAGTCTCTGCACAAGCTGCAATCCAGGCTATGAACGGCTTTCAGATCGGCATGAAACGCTTGAAGGTGCA
GCTGAAACGCTCCAAAAACGACAGCAAACCTTACTGA

Translation (478 aa):
MFERTSELAFVETISVESMRCPKSAVTMRNEELLLSNGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWS
EKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPAD
SEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAM
HQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSN
LGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSSTSSALGALTSPVAASTPNSTAGAAM
NSLTSLGTLQGLAGATVGLNNINALAGMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLY
SQSLLQQQSAAGSQKEGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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