CCDS Report for Consensus CDS

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Report for CCDS19122.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
19122.1	Public	Mus musculus	5	Agap3	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19122.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000024123.8	ENSMUSP00000024123.4	Accepted	alive
		NCBI	NM_139153.2	NP_631892.2	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_631892.2	910	Q8VHH5-1	910	99.011%	0	9

Chromosomal Locations for CCDS 19122.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)

Genome Browser links:

Chromosome	Start	Stop
5	24452207	24452534
5	24476378	24476436
5	24476633	24476720
5	24476904	24476989
5	24477069	24477210
5	24477739	24477873
5	24478010	24478137
5	24479631	24479789
5	24483341	24483433
5	24487789	24487893
5	24492958	24493126
5	24496733	24496903
5	24498070	24498207
5	24499658	24499812
5	24499915	24500005
5	24500123	24500345
5	24501010	24501265
5	24501397	24501603

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2733 nt):
ATGAACTTCCAGGCAGGCGGGGGCCAGAGTCCTCAGCAGCAGCAGAGCCTGGCGGCTCCGGGGACCGGCG GCGGCGGCGGCGGCGGCGCGGGGGGCGGCGGGCAGTTCGGCGGCGCGGGGCCCGGAGCCGGGGGTGGCGG CCCCTCGCAGCAGCTGGCTGGCGGCCCCCCCCAGCAGTTCGCGCTCTCCAACTCGGCCGCTATCCGAGCC GAGATCCAACGCTTCGAGTCGGTACACCCCAACATCTACGCCATCTACGACCTGATCGAGCGAATCGAGG ATTTGGCGCTGCAGAACCAGATCCGGGAGCACGTCATCTCCATCGAGGACTCATTTGTGAACAGCCAGGA GTGGACCCTGAGCCGCTCTGTGCCAGAGCTTAAAGTGGGCATAGTGGGCAACCTGTCTAGTGGGAAATCA GCCTTGGTTCACCGATATCTGACAGGGACTTATGTCCAGGAAGAGTCCCCTGAAGGGGGTCGATTTAAAA AGGAGATTGTAGTGGATGGCCAGAGTTACCTGCTGCTGATCCGGGATGAAGGAGGCCCCCCTGAACTCCA GTTTGCTGCCTGGGTGGATGCGGTGGTGTTTGTGTTCAGCCTGGAGGATGAAATCAGCTTCCAGACGGTG TACAACTACTTCCTACGCCTCTGCAGCTTTCGAAATGCCAGCGAGGTGCCCATGGTGCTGGTGGGCACAC AGGATGCCATCAGTGCCGCCAATCCCCGGGTCATTGATGACAGCAGGGCCCGCAAACTGTCCACAGACCT GAAGCGCTGTACCTACTATGAAACATGCGCAACCTATGGGCTCAATGTGGAACGAGTCTTCCAGGACGTG GCCCAGAAGGTGGTAGCCTTGAGGAAGAAGCAGCAGCTGGCGATCGGGCCCTGCAAGTCCCTGCCCAACT CACCCAGCCACTCGGCCGTGTCAGCTGCCTCCATCCCAGCTGTGCACATCAATCAGGCCACCAACGGAGG CAGCAGCGCCTTCAGCGACTACTCGTCCTCAGTCCCCTCCACCCCTAGCATCAGCCAGCGGGAGCTGCGC ATCGAGACCATCGCTGCCTCCTCCACCCCCACGCCCATCCGCAAGCAGTCCAAGCGGCGTTCTAACATCT TCACGTCTCGAAAAGGTGCTGACCTGGACAGGGAGAAGAAAGCTGCGGAGTGCAGAGTGGACAGCATCGG GAGTGGCCGGGCCATCCCCATCAAGCAGGGGATCCTGCTGAAAAGAAGCGGCAAATCCTTGAACAAGGAG TGGAAGAAGAAGTATGTGACGCTGTGTGACAACGGGTTGCTTACTTACCACCCTAGCCTGCACGATTACA TGCAAAACATCCACGGCAAAGAGATCGACCTCCTACGGACTACGGTGAAAGTGCCAGGGAAGCGTCTGCC CCGAGCCACACCCACTACAGCCCCAGGCACCAGTCCCCGTGCCAACGGGTTGGCAATGGAGCGGAGTAAC ACACAGCTGGGTGGGGCCACAGGTGCCCCCCACTCGGCCAGCAGCACATCCCTGCATTCTGAGCGCCCTC ACAGCTCAGCCTGGGCTGGCTCACGCCCCGGCCCCGAGGGGCTGCACCAGCGCTCCTGTTCGGTTTCCAG CACTGACCAGTGGAGTGAGGCAGCTGCCCTGCCTGCCAGCATGCAGCACCCTGCCAGTGGCCCAGCTGAG TCACTCAGTTCCAGCCCCAAGCTGGAGCCTCCCCCATCTCCCCACTCCAACCGGAAGAAGCACCGCGGGA AAAAGAGCACCGGGACCCCCCGACCAGACGGCCCCAGCAGTGCTGCTGAAGAGGCAGAGGAGTCCTTTGA GTTTGTAGTGGTGTCCCTCACTGGTCAGACCTGGCATTTTGAGGCCTCAACAGCAGAAGAGCGGGAACTA TGGGTGCAGAGCGTGCAGGCCCAAATCCTCGCCAGCCTACAAGGATGTCGCAGCGCCAAGGACAAGACTC GGCTGGGGAACCAGAACACAGCCCTGGCGGTGCAGGCTGTCCGCACGGTCCGCGGCAACAGCCTCTGTAT TGACTGTGAAGCCCCCAATCCAGACTGGGCCAGCCTGAATCTGGGTGCCCTGATGTGTATCGAGTGCTCA GGGATCCACCGACACCTGGGAGCTCACCTGTCCCGAGTCCGCTCCTTGGACCTTGACGACTGGCCACCTG AACTGCTGGCCGTCATGACTGCAATGGGCAACGCCTTGGCTAACAGTGTCTGGGAGGGGGCTCTGGATGG TTACTCTAAGCCAGGCCCCGAAGCCTGCAGAGAGGAGAAAGAGCGCTGGATCCGAGCCAAGTATGAGCAG AAGCTCTTCTTGGCCCCGCTGCCAAGCTCAGATGTGCCGCTGGGACAGCAGTTACTCCGGGCTGTGGTGG AGGATGACCTGCGGCTGCTGGTGATGCTGCTGGCCCACGGGTCCAAGGAGGAGGTGAACGAGACATACGG GGACGGTGACGGGAGGACAGCCCTGCACCTGTCCAGTGCCATGGCCAATGTGGTGTTCACACAGCTGCTC ATCTGGTACGGGGTGGACGTGAGGAGCCGTGATGCCCGAGGACTGACCCCACTGGCCTATGCCCGTCGTG CCGGCAGCCAGGAGTGTGCAGACATCTTGATCCAGCATGGGTGTCCCGGGGAAGGCTGTGGCTTAGCACC CACTCCCAACAGAGAGCCTGCCAATGGCACCAACCCCTCCGCAGAACTGCACCGCAGCCCTAGTATCCTA TGA
Translation (910 aa):
MNFQAGGGQSPQQQQSLAAPGTGGGGGGGAGGGGQFGGAGPGAGGGGPSQQLAGGPPQQFALSNSAAIRA EIQRFESVHPNIYAIYDLIERIEDLALQNQIREHVISIEDSFVNSQEWTLSRSVPELKVGIVGNLSSGKS ALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQFAAWVDAVVFVFSLEDEISFQTV YNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDV AQKVVALRKKQQLAIGPCKSLPNSPSHSAVSAASIPAVHINQATNGGSSAFSDYSSSVPSTPSISQRELR IETIAASSTPTPIRKQSKRRSNIFTSRKGADLDREKKAAECRVDSIGSGRAIPIKQGILLKRSGKSLNKE WKKKYVTLCDNGLLTYHPSLHDYMQNIHGKEIDLLRTTVKVPGKRLPRATPTTAPGTSPRANGLAMERSN TQLGGATGAPHSASSTSLHSERPHSSAWAGSRPGPEGLHQRSCSVSSTDQWSEAAALPASMQHPASGPAE SLSSSPKLEPPPSPHSNRKKHRGKKSTGTPRPDGPSSAAEEAEESFEFVVVSLTGQTWHFEASTAEEREL WVQSVQAQILASLQGCRSAKDKTRLGNQNTALAVQAVRTVRGNSLCIDCEAPNPDWASLNLGALMCIECS GIHRHLGAHLSRVRSLDLDDWPPELLAVMTAMGNALANSVWEGALDGYSKPGPEACREEKERWIRAKYEQ KLFLAPLPSSDVPLGQQLLRAVVEDDLRLLVMLLAHGSKEEVNETYGDGDGRTALHLSSAMANVVFTQLL IWYGVDVRSRDARGLTPLAYARRAGSQECADILIQHGCPGEGCGLAPTPNREPANGTNPSAELHRSPSIL

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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