NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16979.1 Public Mus musculus 2 Blcap 23 108 98 CCDS HistoryNCBI Gene:53619Re-query CCDS DB by CCDS ID:16979.1Re-query CCDS DB by GeneID:53619See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16979.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088494.2 ENSMUSP00000085849.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088494.2Link to Ensembl Protein Viewer:ENSMUSP00000085849.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000088494Re-query CCDS DB by Protein ID:ENSMUSP00000085849
Original member Current member EBI ENSMUST00000109528.8 ENSMUSP00000105154.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109528.8Link to Ensembl Protein Viewer:ENSMUSP00000105154.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109528Re-query CCDS DB by Protein ID:ENSMUSP00000105154
Original member Current member NCBI NM_001355426.1 NP_001342355.1 Accepted alive Link to Nucleotide Sequence:NM_001355426.1Link to Protein Sequence:NP_001342355.1Re-query CCDS DB by Nucleotide ID:NM_001355426Re-query CCDS DB by Protein ID:NP_001342355Link to BLAST:NP_001342355.1
Original member Current member NCBI NM_016916.3 NP_058612.3 Accepted alive Link to Nucleotide Sequence:NM_016916.3Link to Protein Sequence:NP_058612.3Re-query CCDS DB by Nucleotide ID:NM_016916Re-query CCDS DB by Protein ID:NP_058612Link to BLAST:NP_058612.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342355.1 87 P62951 87 100% 0 0
NP_058612.3 87 P62951 87 100% 0 0

Chromosomal Locations for CCDS 16979.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 157557890 157558153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (264 nt):
ATGTATTGCCTCCAGTGGCTGCTGCCCGTCCTCCTCATCCCCAAGCCCCTCAACCCCGCTCTGTGGTTCA
GCCACTCCATGTTCATGGGCTTCTACCTGCTCAGCTTCCTCCTGGAACGGAAACCTTGCACAATATGTGC
CTTGGTTTTCCTGGCAGCCCTCTTTCTCATCTGCTATAGCTGCTGGGGAAATTGTTTCCTGTACCACTGC
TCCGATTCCCCACTTCCGGAATCAGCCCATGACCCCGGTGTTGTGGGCACCTAA

Translation (87 aa):
MYCLQWLLPVLLIPKPLNPALWFSHSMFMGFYLLSFLLERKPCTICALVFLAALFLICYSCWGNCFLYHC
SDSPLPESAHDPGVVGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH