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Report for CCDS37592.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37592.1 Public Mus musculus 17 Hspa1b 23 108 98 CCDS HistoryNCBI Gene:15511Re-query CCDS DB by CCDS ID:37592.1Re-query CCDS DB by GeneID:15511See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37592.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172753.1 ENSMUSP00000133815.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172753.1Link to Ensembl Protein Viewer:ENSMUSP00000133815.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172753Re-query CCDS DB by Protein ID:ENSMUSP00000133815
Original member NCBI NM_010478.2 NP_034608.2 Updated not alive Link to Nucleotide Sequence:NM_010478.2Link to Protein Sequence:NP_034608.2Re-query CCDS DB by Nucleotide ID:NM_010478Re-query CCDS DB by Protein ID:NP_034608
Current member NCBI NM_010478.3 NP_034608.2 Accepted alive Link to Nucleotide Sequence:NM_010478.3Link to Protein Sequence:NP_034608.2Re-query CCDS DB by Nucleotide ID:NM_010478Re-query CCDS DB by Protein ID:NP_034608Link to BLAST:NP_034608.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034608.2 642 P17879 642 100% 0 0

Chromosomal Locations for CCDS 37592.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34957079 34959007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1929 nt):
ATGGCCAAGAACACGGCGATCGGCATCGACCTGGGCACCACCTACTCGTGCGTGGGCGTGTTCCAGCACG
GCAAGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACGACCCCCAGCTACGTGGCCTTCACCGACAC
CGAGCGCCTCATCGGGGACGCCGCCAAGAACCAGGTGGCGCTGAACCCGCAGAACACCGTGTTCGACGCG
AAGCGGCTGATCGGCCGCAAGTTCGGCGATGCGGTGGTGCAGTCCGACATGAAGCACTGGCCCTTCCAGG
TGGTGAACGACGGCGACAAGCCCAAGGTGCAGGTGAACTACAAGGGCGAGAGCCGGTCGTTCTTCCCGGA
GGAGATCTCGTCCATGGTGCTGACGAAGATGAAGGAGATCGCTGAGGCGTACCTGGGCCACCCGGTGACC
AACGCGGTGATCACGGTGCCCGCCTACTTCAACGACTCTCAGCGGCAGGCCACCAAGGACGCGGGCGTGA
TCGCCGGTCTAAACGTGCTGCGGATCATCAACGAGCCCACGGCGGCCGCCATCGCCTACGGGCTGGACCG
GACCGGCAAGGGCGAGCGCAACGTGCTCATCTTCGACCTGGGGGGCGGCACGTTCGACGTGTCCATCCTG
ACGATCGACGACGGCATCTTCGAGGTGAAGGCCACGGCGGGCGACACGCACCTGGGAGGGGAGGACTTCG
ACAACCGGCTGGTGAGCCACTTCGTGGAGGAGTTCAAGAGGAAGCACAAGAAGGACATCAGCCAGAACAA
GCGCGCGGTGCGGCGGCTGCGCACGGCGTGTGAGAGGGCCAAGAGGACGCTGTCGTCCAGCACCCAGGCC
AGCCTGGAGATCGACTCTCTGTTCGAGGGCATCGACTTCTACACATCCATCACGCGGGCGCGGTTCGAAG
AGCTGTGCTCGGACCTGTTCCGCGGCACGCTGGAGCCCGTGGAGAAGGCCCTGCGCGACGCCAAGATGGA
CAAGGCGCAGATCCACGACCTGGTGCTGGTGGGCGGCTCGACGCGCATCCCCAAGGTGCAGAAGCTGCTG
CAGGACTTCTTCAACGGGCGCGACCTGAACAAGAGCATCAACCCGGACGAGGCGGTGGCCTACGGGGCGG
CGGTGCAGGCGGCCATCCTGATGGGGGACAAGTCGGAGAACGTGCAGGACCTGCTGCTGCTGGACGTGGC
GCCGCTGTCGCTGGGCCTGGAGACTGCGGGCGGCGTGATGACGGCGCTCATCAAGCGCAACTCCACCATC
CCCACCAAGCAGACGCAGACCTTCACCACCTACTCGGACAACCAGCCCGGGGTGCTGATCCAGGTGTACG
AGGGCGAGAGGGCCATGACGCGCGACAACAACCTGCTGGGGCGCTTCGAGCTGAGCGGCATCCCGCCGGC
GCCCAGGGGCGTGCCGCAGATCGAGGTGACCTTCGACATCGACGCCAACGGCATCCTGAACGTCACGGCC
ACCGACAAGAGCACCGGCAAGGCCAACAAGATCACCATCACCAACGACAAGGGCCGCCTGAGCAAGGAGG
AGATCGAGCGCATGGTGCAGGAGGCCGAGCGCTACAAGGCCGAGGACGAGGTGCAGCGCGACAGGGTGGC
CGCCAAGAACGCGCTCGAGTCCTATGCCTTCAACATGAAGAGCGCCGTGGAGGACGAGGGTCTCAAGGGC
AAGCTCAGCGAGGCTGACAAGAAGAAGGTGCTGGACAAGTGCCAGGAGGTCATCTCCTGGCTGGACTCCA
ACACGCTGGCCGACAAGGAGGAGTTCGTGCACAAGCGGGAGGAGCTGGAGCGGGTGTGCAGCCCCATCAT
CAGTGGGCTGTACCAGGGTGCGGGTGCTCCTGGGGCTGGGGGCTTCGGGGCCCAGGCGCCGCCGAAAGGA
GCCTCTGGCTCAGGACCCACCATCGAGGAGGTGGATTAG

Translation (642 aa):
MAKNTAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDA
KRLIGRKFGDAVVQSDMKHWPFQVVNDGDKPKVQVNYKGESRSFFPEEISSMVLTKMKEIAEAYLGHPVT
NAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDRTGKGERNVLIFDLGGGTFDVSIL
TIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQA
SLEIDSLFEGIDFYTSITRARFEELCSDLFRGTLEPVEKALRDAKMDKAQIHDLVLVGGSTRIPKVQKLL
QDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTI
PTKQTQTFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTA
TDKSTGKANKITITNDKGRLSKEEIERMVQEAERYKAEDEVQRDRVAAKNALESYAFNMKSAVEDEGLKG
KLSEADKKKVLDKCQEVISWLDSNTLADKEEFVHKREELERVCSPIISGLYQGAGAPGAGGFGAQAPPKG
ASGSGPTIEEVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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