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Report for CCDS36287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36287.1 Public Mus musculus 11 Zfp652 23 108 98 CCDS HistoryNCBI Gene:268469Re-query CCDS DB by CCDS ID:36287.1Re-query CCDS DB by GeneID:268469See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36287.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091565.4 ENSMUSP00000089153.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091565.4Link to Ensembl Protein Viewer:ENSMUSP00000089153.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000091565Re-query CCDS DB by Protein ID:ENSMUSP00000089153
Original member Current member EBI ENSMUST00000107717.7 ENSMUSP00000103345.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107717.7Link to Ensembl Protein Viewer:ENSMUSP00000103345.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107717Re-query CCDS DB by Protein ID:ENSMUSP00000103345
Original member Current member NCBI NM_201609.2 NP_963903.2 Accepted alive Link to Nucleotide Sequence:NM_201609.2Link to Protein Sequence:NP_963903.2Re-query CCDS DB by Nucleotide ID:NM_201609Re-query CCDS DB by Protein ID:NP_963903Link to BLAST:NP_963903.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_963903.2 608 Q5DU09-1 608 100% 0 0

Chromosomal Locations for CCDS 36287.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 95749251 95750147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95752875 95753022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95753362 95753477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95753911 95754055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95763539 95764059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1827 nt):
ATGAGCTACACAGCCAGTCCTTGTCCGGAGCTGGTTGAACCCTGTGCAGTGCATGCAGAAGGAATGGCCC
AGGAAGAGAGCCATCGAAGTCAGGCGCCACCCACCTTCTACCATGGTGCCAGCCAGGAGCTCGACCTGTC
CACCAAAGTGTATAAAAGGGAGTCTGGAAGCCCTTACTCTGTGCTAGCAGACACCAAGATGAGCAAACCA
CATCTCCACGAGACGGAGGAGCAGCCATATTTCAGGGAGCCAAGGGCAGTGTCTGATGTGCATACTGTCA
AGGAAGACCGGGAGAATTCTGATGACACGGAAGAGGAGGAGGAAGTCTCTTACAAAAGGGAGCAGATCAT
AGTGGAGGTAAACCTTAATAACCAAACATTAAATGTCTCTAAAGGGGAAAAGGGTGTCTCTTCCCAGTCC
AAAGAGACGCCTGTCCTTAAGACAAGCAGTGAGGAAGACGAGGAAGAGACTGAGGAGGAGGCCACAGATA
ACAGCAGTGACTACGGAGAGAACGGACGGCAGAAGAAAAAGGAGAAGCAAGTGGAGAGAGTCAGGGTTAC
ACAGAGGCGAACCCGGAGAGCGGCCTCTGCTGCCGCAGCTACCACTTCCCCTGCACCCCGCACAACTCGA
GGCCGTAGGAAAAGTGCAGAGCTACCCAAGAGGAAGAAGCGGGCCACCAAGGAGGCTAAAGCGCCAGTTC
AGAAAGCTAAGTGTGAAGAGAAAGAGACTCTGACCTGTGAGAAGTGCCCCAGGGTGTTTAATACTCGCTG
GTACCTGGAGAAGCACATGAACGTTACTCACAGGCGCATGCAGATCTGTGATAAATGTGGCAAGAAGTTT
GTCCTGGAAAGTGAGCTGTCCCTTCACCAGCAAACAGACTGTGAAAAAAACATTCAGTGTGTTTCCTGTA
ACAAATCCTTCAAGAAACTCTGGTCCCTTCATGAACATATCAAGATTGTCCATGGATATGCAGAAAAAAA
ATTTGCCTGTGAAATTTGCGAGAAGAAGTTCTATACCATGGCTCATGTACGAAAACACATGGTTGCACAC
ACAAAAGACATGCCATTTACATGTGAGACCTGTGGAAAGTCTTTCAAGCGCAGTATGTCACTCAAGGTGC
ACTCCTTGCAGCATTCTGGAGAGAAACCCTTCAGATGTGAGAACTGCGATGAGAGGTTCCAGTACAAGTA
CCAGCTCCGCTCCCACATGAGCATCCACATTGGGCACAAGCAGTTCATGTGCCAGTGGTGTGGCAAGGAC
TTCAACATGAAGCAGTACTTCGACGAGCACATGAAGACGCACACTGGAGAGAAGCCTTTCATCTGTGAAA
TCTGCGGCAAAAGCTTCACCAGCCGACCCAACATGAAGAGGCACCGCAGAACTCACACAGGCGAGAAGCC
CTACCCCTGCGATGTGTGCGGTCAGCGGTTCCGCTTTTCCAACATGCTGAAGGCCCACAAGGAGAAGTGC
TTCCGAGTGACCAGCCCAGTGAATGTGCCGCCAGCTGTCCAGATCCCACTGGCCTCAGCTCCAGCTGCTC
CCGCTCCGGCCGTGGCCAACACTCCCACCAGCCCAGCCCCTGCAGTCAGTATGAGCCCCGTGGGTGCTGT
GCTTCCCTCGAGACCCGTCCCGCACCCTTTCTCACACCTGCACATACACACGCATCCACACCACGCGCAC
CACCTCCCCATCCCTCCTGTGCCTCACCTGCCCCCACCCCCAGCCCTCTTCAAGAGTGAACCCCTAAACC
ACAGAAGCCAGAGCGAGGACACCTTTCTGAGACACCTGGCAGAGAAGAACAGTGCGGCCCCCGCCCAGCA
CCATTAG

Translation (608 aa):
MSYTASPCPELVEPCAVHAEGMAQEESHRSQAPPTFYHGASQELDLSTKVYKRESGSPYSVLADTKMSKP
HLHETEEQPYFREPRAVSDVHTVKEDRENSDDTEEEEEVSYKREQIIVEVNLNNQTLNVSKGEKGVSSQS
KETPVLKTSSEEDEEETEEEATDNSSDYGENGRQKKKEKQVERVRVTQRRTRRAASAAAATTSPAPRTTR
GRRKSAELPKRKKRATKEAKAPVQKAKCEEKETLTCEKCPRVFNTRWYLEKHMNVTHRRMQICDKCGKKF
VLESELSLHQQTDCEKNIQCVSCNKSFKKLWSLHEHIKIVHGYAEKKFACEICEKKFYTMAHVRKHMVAH
TKDMPFTCETCGKSFKRSMSLKVHSLQHSGEKPFRCENCDERFQYKYQLRSHMSIHIGHKQFMCQWCGKD
FNMKQYFDEHMKTHTGEKPFICEICGKSFTSRPNMKRHRRTHTGEKPYPCDVCGQRFRFSNMLKAHKEKC
FRVTSPVNVPPAVQIPLASAPAAPAPAVANTPTSPAPAVSMSPVGAVLPSRPVPHPFSHLHIHTHPHHAH
HLPIPPVPHLPPPPALFKSEPLNHRSQSEDTFLRHLAEKNSAAPAQHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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