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Report for CCDS17937.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17937.1 Public Mus musculus 4 Tmem68 23 108 98 CCDS HistoryNCBI Gene:72098Re-query CCDS DB by CCDS ID:17937.1Re-query CCDS DB by GeneID:72098See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17937.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029891.11 ENSMUSP00000029891.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029891.11Link to Ensembl Protein Viewer:ENSMUSP00000029891.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029891Re-query CCDS DB by Protein ID:ENSMUSP00000029891
Original member Current member NCBI NM_028097.4 NP_082373.1 Accepted alive Link to Nucleotide Sequence:NM_028097.4Link to Protein Sequence:NP_082373.1Re-query CCDS DB by Nucleotide ID:NM_028097Re-query CCDS DB by Protein ID:NP_082373Link to BLAST:NP_082373.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082373.1 329 Q9D850-1 329 100% 0 0

Chromosomal Locations for CCDS 17937.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 3550475 3550579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3551752 3551891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3554354 3554414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3560499 3560692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3564093 3564257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3569364 3569688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGATAGATAACAACCAAACCTGTGCTGCAGGACAGGACTCTGTGCCCTATGTGACCTGTATGATTTATG
TGCTTGAGGAGTGGTTGGGTGTGGAGCAATTGGAGGACTATCTGAATTTTGCAAACCATCTTTTGTGGGT
TTTCACCCCACTGATACTTTTAATACTTCCTTATTTTACCATCTTTCTTCTCTACCTTACTATTATTTTC
CTCCATATCTACAAGAGGAAGAATGTATTAAAAGAAGCCTACTCTCATAACTTGTGGGATGGTGCAAGGA
AAACGGTGGCAACTCTGTGGGATGGACATGCGGCTGTTTGGCATGGTTATGAAGTTCATGGGATGGAAAA
GATACCAGAAGGAGCTGCACTTATAATTTTTTATCATGGAGCCATCCCCATAGACTTTTACTACTTCATG
GCTAAAATTTTCATCCAGAAAGGCAGAACTTGCCGAGTAGTAGCTGACCACTTTGTCTTTAAAATTCCAG
GGTTCAGTTTATTACTTGATGTGTTTTGTGCTCTTCATGGACCAAGAGAAAAATGTGTTGAAATCTTGAG
GAGTGGTCACTTGTTAGCTATCTCACCGGGCGGAGTTCGAGAAGCCTTACTTAGTGATGAAACCTACAAC
ATCATATGGGGTAATCGTAAAGGCTTTGCTCAGGTTGCAATTGATGCAAAAGTGCCCATTATTCCTATGT
TTACACAAAATATTCGAGAAGGATTTAGATCACTTGGAGGCACAAGATTATTTAAGTGGCTTTATGAAAA
ATTCCGCTATCCATTTGCTCCAATGTATGGAGGTTTTCCTGTAAAGTTGCGGACCTTCTTAGGTGATCCC
ATACCATATGACCCAAAGGTAACAGCAGAAGAATTAGCCGAAAAGACCAAGAATGCTGTTCAAGCTTTGA
TTGACAAGCACCAAAGGATACCGGGGAACATTAGGAGTGCTCTGCTGGACCGCTTTCATAAAGAGCAGAA
GGCTCATTAG

Translation (329 aa):
MIDNNQTCAAGQDSVPYVTCMIYVLEEWLGVEQLEDYLNFANHLLWVFTPLILLILPYFTIFLLYLTIIF
LHIYKRKNVLKEAYSHNLWDGARKTVATLWDGHAAVWHGYEVHGMEKIPEGAALIIFYHGAIPIDFYYFM
AKIFIQKGRTCRVVADHFVFKIPGFSLLLDVFCALHGPREKCVEILRSGHLLAISPGGVREALLSDETYN
IIWGNRKGFAQVAIDAKVPIIPMFTQNIREGFRSLGGTRLFKWLYEKFRYPFAPMYGGFPVKLRTFLGDP
IPYDPKVTAEELAEKTKNAVQALIDKHQRIPGNIRSALLDRFHKEQKAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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