NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27364.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27364.1 Public Mus musculus 15 Ttc33 23 108 98 CCDS HistoryNCBI Gene:67515Re-query CCDS DB by CCDS ID:27364.1Re-query CCDS DB by GeneID:67515See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27364.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022751.14 ENSMUSP00000022751.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022751.14Link to Ensembl Protein Viewer:ENSMUSP00000022751.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022751Re-query CCDS DB by Protein ID:ENSMUSP00000022751
Original member Current member EBI ENSMUST00000118193.7 ENSMUSP00000114033.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118193.7Link to Ensembl Protein Viewer:ENSMUSP00000114033.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118193Re-query CCDS DB by Protein ID:ENSMUSP00000114033
Original member Current member NCBI NM_001355620.1 NP_001342549.1 Accepted alive Link to Nucleotide Sequence:NM_001355620.1Link to Protein Sequence:NP_001342549.1Re-query CCDS DB by Nucleotide ID:NM_001355620Re-query CCDS DB by Protein ID:NP_001342549Link to BLAST:NP_001342549.1
Original member Current member NCBI NM_001355621.1 NP_001342550.1 Accepted alive Link to Nucleotide Sequence:NM_001355621.1Link to Protein Sequence:NP_001342550.1Re-query CCDS DB by Nucleotide ID:NM_001355621Re-query CCDS DB by Protein ID:NP_001342550Link to BLAST:NP_001342550.1
Original member Current member NCBI NM_026213.3 NP_080489.1 Accepted alive Link to Nucleotide Sequence:NM_026213.3Link to Protein Sequence:NP_080489.1Re-query CCDS DB by Nucleotide ID:NM_026213Re-query CCDS DB by Protein ID:NP_080489Link to BLAST:NP_080489.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342549.1 262 Q9D6K7-1 262 100% 0 0
NP_001342550.1 262 Q9D6K7-1 262 100% 0 0
NP_080489.1 262 Q9D6K7-1 262 100% 0 0

Chromosomal Locations for CCDS 27364.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 5189583 5189803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 5208369 5208450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 5211999 5212130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 5217150 5217503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGGCTTCCTTTGGGTGGAAGAGGAGAATTGGCGAGAAGGTATCCAAGGCCACGTCCCAGCAGTTTGAAG
CAGAAGCAGCTGATGAGAAGGATGCAGCTGAGAACGAGGATGGGAACTGGCTTCAGGCCAGCAAACGGAG
GAAGGAAACCCTGCAGGAGGGCTGTAAACAGAGGAGCCAACAGCTGAAGGATGAAGGGGCTCAGCTGGCT
GAAAACAAACGATACAAGGAGGCAATTCAGAAGTGGGATGAAGCACTACAGCTAACCCCAGGTGATGCCA
CCCTTTATGAGATGAAATCACAGGTCCTGCTGTCTCTTCATGAAATGTTTCCAGCAGTCCATGCAGCAGA
GATGGCTGTCAAGCGTAACCCACACTCGTGGGAGGCGTGGCAAACTTTAGGTCGAGCTCAGCTTGGATTA
GGAGAGATAGTTCTGGCAATTCGAAGCTTTCAAATAGCCCTGCACATATATCCGATGAACCCTGAACTCT
GGAAGGAAGACCTTTCTTGGGCCAGAAAGCTCCAAGAACAGCAGAAAGTAGCCCAGAGGATTGAAAACAA
AGAAATGCCCCCGGAAGGCCCGGACCTCTCTCCAGGGTCCATCCCGGACTATGACTTTGAAAGCGATGAG
ATTGTTGCTGTTTGTGCAGCCGTGGCAGAAAAACAGAAGTCGGTGTCTGCAAATAAAACAATGGTTATTG
TGTCGGCGTCTGGGACTGTAGAGATCGTAAACGAGAAGGAAGAGGGCTCTTCCACCCCAGATGGCTCCGT
CTTTATCAAAGCCCGGTGA

Translation (262 aa):
MASFGWKRRIGEKVSKATSQQFEAEAADEKDAAENEDGNWLQASKRRKETLQEGCKQRSQQLKDEGAQLA
ENKRYKEAIQKWDEALQLTPGDATLYEMKSQVLLSLHEMFPAVHAAEMAVKRNPHSWEAWQTLGRAQLGL
GEIVLAIRSFQIALHIYPMNPELWKEDLSWARKLQEQQKVAQRIENKEMPPEGPDLSPGSIPDYDFESDE
IVAVCAAVAEKQKSVSANKTMVIVSASGTVEIVNEKEEGSSTPDGSVFIKAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH