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Report for CCDS41201.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41201.1 Public Mus musculus X Nhs 23 108 98 CCDS HistoryNCBI Gene:195727Re-query CCDS DB by CCDS ID:41201.1Re-query CCDS DB by GeneID:195727See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 41201.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081569.6 ENSMUSP00000080280.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081569.6Link to Ensembl Protein Viewer:ENSMUSP00000080280.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000081569Re-query CCDS DB by Protein ID:ENSMUSP00000080280
Original member Current member NCBI NM_001081052.2 NP_001074521.1 Accepted alive Link to Nucleotide Sequence:NM_001081052.2Link to Protein Sequence:NP_001074521.1Re-query CCDS DB by Nucleotide ID:NM_001081052Re-query CCDS DB by Protein ID:NP_001074521Link to BLAST:NP_001074521.1

Chromosomal Locations for CCDS 41201.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 161836815 161837421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161839799 161839925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161840205 161843183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161844172 161844303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161847022 161847214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161871469 161871602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161875240 161875392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162158833 162159388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4881 nt):
ATGCCTTTCGCCAAGCGGATCGTGGAGCCGCAGTGGCTTTGCCGGCAGCGGCGCCCGGCGCCCGGCCCAG
ATGAGGACACGAGTGGAGGCAGCGTTGAGCCGCCGCCGCCCCTGCAGCCGCCTGGCCGGCGGGAAGAGGC
CGAGGCACCGGAGCCAGAAGAGCCTCCTCGTGTGCCCCCTGCGCCTCTCCCACTGCCACCTCTGCCGCCG
TCTTTGCCGGCGCCGGCCGAGCAGGATCAGCAGCCACCCAGCGAAGCGCGGGAGGCCGGGGAGGAGAGCG
TGGCGGGGGTCTCGGAGGCAGCATCGGCCCCAGGCGAGACGTCCGAGGCTTCAGCCGAGGCTGTGCTGCT
CATGTTAGACCTGTGCGCGGTCAGCAACGCTGCGCTGGCCAGGGTCCTCCGGCAGCTCTCAGACGTAGCC
CGGCACGCGTGCAGCCTCTTCCAGGAGCTCGAGAGCGACATCCAGCTTACTCACCGCCGTGTCTGGGCGC
TGCAGGGCAAGCTCGGTAGCGTGCAGCGCGTCCTCAGCACGTTGGACCCCAAGCAGGAGGCAGTGCCTGT
CTCCAACTTGGACATCGAGAGCAAGTTGAGTGTATACTACCGTGCACCATGGCACCAACAGCGAAACATC
TTCCTCCCAGCGACCAGGCCACCCTGTGTAGAAGAGCTGCACCGCCATGCCAGACAGAGTCTGCAAGCCC
TTCGTAGAGAACACCGGAGCCGGAGTGATCGCAGAGAGCAAAGAGCTGCTGCTCCCCTCCCCATAGCTGC
TCCACCACTACCAGCCTACCCTCCAGCTCACAGCCAGAGGAGGCGCGAGGCCAAGGACCGCCACTTCCTA
ACGTCCCACTCTCCAGAGGATGAAGACACAGATGCCATGCTAGGGCAGAGGCCGAAAAACCCAATCCACA
ATGTTCCCTCTACACTGGATAAGCAGACCAACTGGAACAAAGCACTACCTCTCCCAACTCCTGAGGAGAA
GATGAAACAAGATGCCCAAGTGATTTCTTCTTGCATCATTCCCATCAATGTCACCGGTGTTGGTTTTGAC
AGAGAAGCAAGTATACGCTGTTCTCTTGTTCATTCACAATCTGTGCTACAGAGGAGACGAAAACTGAGGA
GAAGGAAAACAATCTCTGGGATTCCCAGAAGAGTTCAACAAGAAATAGATTCTGATGAATCACCAGTGGC
CAGGGAAAGGAATGTGATTGTGCACACAAACCCAGACCCCTCCAACACTGTCAATAGGAGGTCCGGAACC
AGGGACTCTGAATGTCAAACTGAAGATATTCTGATTGCTGCCCCATCCAGAAGGAGAATTAGAGCTCAAA
GGGGTCAAAGCATCGCAGCTTCCCTTTCTCATTCAGCTGGCAACATCTCTGCCCTGGCAGACAAAGGCGA
TACCATGTTTACTCCTGTCGTGAGCAGCCGTACAAGATCTCGGAGCCTTCCTCGGGAGGGAAATAGAGGT
GGAGATGCTGAACCCAAAGTAGGTGCTAAACCCTCAGCATTTGAAGAAGGAGAACGTTTCGTGGGTGACC
ATGAAAGAACCCCTAATGACTGTAGCGAAGCTCCAAGCAGCCCAAGTACACAGGAACACCAGCCTGCTTT
GGGCCTAGCATGTTCTCAACATCTTCACAGCCCTCAGCAAAAGTTAAGTGAGAGAGGGAGATCACGTCTG
TCCCGAATGGCGGCTGACTCTGGAAGCTGTGACATCTCTTCCAACTCGGACACCTTTGGAAGCCCCGTCC
ATTGCATTTCCACAGCTAGTGTCCTCCTTAGCAGCCACATGGACCAGAAAGAAGACCACCAGTCATCCAG
TGGTAACTGGAGTGGGAGCAGCTCTACATGCCCGTCACAGACCTCAGAGACAATCCCTCCTGCAGCTTCT
CCTCCCCTCACGGGCTCTTCTCACTGTGACTCAGAATTGTCACTGAACACTGCTCCTAATGCTAATGAAG
ATGCCAGTGTCTTTGTGACAGAACAGTACAATGACCACTTGGATAAAGTAAGAGGCCACCGGACAAACTC
CTTTACTTCCACTGTTGCAGATCTGCTGGATGACCCCAACAACAGCAATACAAGTGACAGTGAGTGGAAT
TATCTACACCACCATCATGATGCATCTTGCCGCCAAGATTTTAGTCCTGAGCGTCCGAAGGCAGATAGCT
TGGGATGCCCAAGTTTTACAAGCATGGGCACCTATGACAGCTTTCTGGAAAAGTCTCCTTCAGACAAAGC
AGATACTAGCTCTCATTTCTCAGTGGACACTGAAGGATACTATACCTCGATGCACTTTGACTGTGGTCTC
AAAGGTAATAAGACCTATGTCTGTCACTATGCAGGCCTAGGCCCAGAGAATGGTCAGGGTGTCGGGGTTC
CTCCTGCTCTTCCGGACTGTGCCTGGCAAGAATACTTAGACCACAGGAGGCAGGGGAGACCAAGCATCTC
TTTCAGGAAACCAAAGGCAAAGCCAACTCCACCTAAACGTAGCTCATCATTGAGAAAATCTGATGGAAAT
GCAGACATTTCTGAGAAGAAAGAACCAAAGATAAGCAGTGGTCAGCACCTGCCTCACAGTTCCAGGGAAA
TGAAGCTGCCTCTTGATTTCTCCAACACGCCTTCTCGTGTGGAAAATGCCAATCTGCCTGCAAAGCTGGA
CTCTTCTTGGATAAACCAGAGTGAACATGCTATTAAGGAACCTCAGTTGGACACTCCAGACATTTCACCA
TTCAAAGATGAAGGTGCTGAATCAACACACTATGCAGACCTCTGGCTTCTGAATGACTTGAAAACGAATG
ATCCTTACAGATCCTTATCTAATTCTAGCACTGCTACGGGTACCACAGTGATTGAATGCATCAAATCTCC
AGAGAGTTCTGAATCCCAAACATCCCAATCAGAATCAAGAGCAACCACTCCATCTCTTCCTTCAGTTGAC
AATGAATATAAACTGGCTTCACCAGAAAAGCTGGCTGGCTTAGCATCTCCATCAAGTGGCTACTCAAGCC
AGTCAGAAACGCCAACCTCCTCTTTCCCTACAGCTTTCTTTTCAGGACCATTGTCTCCTGGAGGTAGCAA
AAGAAAGCCTAAAGTCCCAGAAAGGAAATCCTCACTACAGCAGCCATCTTTAAAAGATGGTGCCCTATCA
CTGAGTAAAGATTTTGAACTACCAATTATACCTCCTTCTCATCTTGACCTAAGTGCTCTTCATGTTTTGA
ATAAACCATTCCACCACCGTCACCCACTGCATGTTTTTACTCATAAGCAAAACACAGTCGGAGATATGCC
GAGATCAAATCCTGCACCGTCTCTTGCAATTACACCAACAGTTCTCAAGTCTGTCAACCTGAGGTCCATC
AGTAAGTCTGAAGAAGTTAGGCAAAAGGAGGGCAATAATACAGATCTCCCCTACTTAGAAGAGAATGCTG
CCACAGCGGCTTCTGTGGCCTCCTTATCTCCAAGTAAGGCAAGGCCACACACAGCAAAGAAATCAATATC
ACGCCAGTATTCTGCTGAAGATACCCTCCTGCCCTTTTTAGATTCCTCTGTAGCTGAGATGGGACCAGAG
AAGCATTTGGAAAAGAACCCTAATTTTGATGGAAAGAGTCATGGTGATCCAGAAACTGCAACCTCAGCTA
GCAGCAATCTTCCAGATTCAAATGTGATGAAAGAACAAATACAGATGGAAAGCGAGCTTATCTCAGAAAA
CATACTAAGTAAGAACTGTGGATTTTCAACAGGATTTCAGAGGGTGTCTGCTTCCCGCCCCAGTGATTTG
GGTAGTAAAATGATACAGTATGGAGCTAGTCCAGATGGCACTGTACAGCAAGGACAGAAGGCACCCTCTG
GAGTCAGGGAAGAAGGTGGAAAACCAGAATCTGTGGATGGAATCACACTTCAAGCCAATTCATCAACTAG
AGTAACAGACATAAGCAGTCAATATAAGCATCAGCGTGTTATAAGCCGCCACCATGACAAAGTGCCTGTG
ACTATCCGCCATGAGTCAGAGATGTCAACTGTAAATTCATTCCCTGAAAAATGTTCTGAACAGGAAAATA
TTGCTTCAGGTATTTCACCCCAAAGTGCCTCTGATAACAGCAGAGCAGAGGAGACCCAAGGAAGTATGGA
CGAGACTTCATTGAAAGAATCCTCACCAAGTGATGACTCCATCACTTCACCACTCAGTGAGGACTCTCAA
GCTGGAGCTGAGGGTGTGTTTGTGTCTCCAAACAAACCTCGAACCACTGAGGACCTATTTGCAGTCATTC
ACAGATCCAAGAGGAAAGTACTTGGAAGAAAAGATTCTGGGGATATGTCTGTCAGAAGCAAATCAAGAGT
TCCCCTTGGTAGCAGTAGCAGCAGTGCCAATTCTGTCACTTCACCCAGCAGCAATGTGACAGCTGGGACT
AGCCAGAGGTCTCCTGGTCTCATCTACAGAAATGCCAAAAAGTCCAACACATCCAATGAAGAGTTTAAGC
TGCTGCTCCTCAAGAAAGGCAGTCGTTCAGATTCTAGTTACCGCATGTCTGCTACTGAAATCCTGAAGAG
CCCGGTCCTGCCCAAGCCTCCTGGGGAGTTTACTGCAGAGTCCCCACAAAGCCCCGATGATACCCATCAG
GGCACACCTGGGACTGAAGCACTGTCTCCTCTGTCGCCGTGCTCACCACGAGTCAATGCGGAAGGGTTCT
CCTCGAAGAACTTTGCAACCTCAGCATCAGCACGGGTTGGACGCTCCCGGGTCCCACCTGTGGCCAGCAG
CAGCCGCTACAGTGTCCGCTGCCGGCTGTACAATACTCCAATGCAGGCCATCTCTGAGGGAGAGACTGAA
AACTCTGATGGGAGCCCACATGATGACCGATCCTCCCAGAGCTCCACCTAG

Translation (1626 aa):
MPFAKRIVEPQWLCRQRRPAPGPDEDTSGGSVEPPPPLQPPGRREEAEAPEPEEPPRVPPAPLPLPPLPP
SLPAPAEQDQQPPSEAREAGEESVAGVSEAASAPGETSEASAEAVLLMLDLCAVSNAALARVLRQLSDVA
RHACSLFQELESDIQLTHRRVWALQGKLGSVQRVLSTLDPKQEAVPVSNLDIESKLSVYYRAPWHQQRNI
FLPATRPPCVEELHRHARQSLQALRREHRSRSDRREQRAAAPLPIAAPPLPAYPPAHSQRRREAKDRHFL
TSHSPEDEDTDAMLGQRPKNPIHNVPSTLDKQTNWNKALPLPTPEEKMKQDAQVISSCIIPINVTGVGFD
REASIRCSLVHSQSVLQRRRKLRRRKTISGIPRRVQQEIDSDESPVARERNVIVHTNPDPSNTVNRRSGT
RDSECQTEDILIAAPSRRRIRAQRGQSIAASLSHSAGNISALADKGDTMFTPVVSSRTRSRSLPREGNRG
GDAEPKVGAKPSAFEEGERFVGDHERTPNDCSEAPSSPSTQEHQPALGLACSQHLHSPQQKLSERGRSRL
SRMAADSGSCDISSNSDTFGSPVHCISTASVLLSSHMDQKEDHQSSSGNWSGSSSTCPSQTSETIPPAAS
PPLTGSSHCDSELSLNTAPNANEDASVFVTEQYNDHLDKVRGHRTNSFTSTVADLLDDPNNSNTSDSEWN
YLHHHHDASCRQDFSPERPKADSLGCPSFTSMGTYDSFLEKSPSDKADTSSHFSVDTEGYYTSMHFDCGL
KGNKTYVCHYAGLGPENGQGVGVPPALPDCAWQEYLDHRRQGRPSISFRKPKAKPTPPKRSSSLRKSDGN
ADISEKKEPKISSGQHLPHSSREMKLPLDFSNTPSRVENANLPAKLDSSWINQSEHAIKEPQLDTPDISP
FKDEGAESTHYADLWLLNDLKTNDPYRSLSNSSTATGTTVIECIKSPESSESQTSQSESRATTPSLPSVD
NEYKLASPEKLAGLASPSSGYSSQSETPTSSFPTAFFSGPLSPGGSKRKPKVPERKSSLQQPSLKDGALS
LSKDFELPIIPPSHLDLSALHVLNKPFHHRHPLHVFTHKQNTVGDMPRSNPAPSLAITPTVLKSVNLRSI
SKSEEVRQKEGNNTDLPYLEENAATAASVASLSPSKARPHTAKKSISRQYSAEDTLLPFLDSSVAEMGPE
KHLEKNPNFDGKSHGDPETATSASSNLPDSNVMKEQIQMESELISENILSKNCGFSTGFQRVSASRPSDL
GSKMIQYGASPDGTVQQGQKAPSGVREEGGKPESVDGITLQANSSTRVTDISSQYKHQRVISRHHDKVPV
TIRHESEMSTVNSFPEKCSEQENIASGISPQSASDNSRAEETQGSMDETSLKESSPSDDSITSPLSEDSQ
AGAEGVFVSPNKPRTTEDLFAVIHRSKRKVLGRKDSGDMSVRSKSRVPLGSSSSSANSVTSPSSNVTAGT
SQRSPGLIYRNAKKSNTSNEEFKLLLLKKGSRSDSSYRMSATEILKSPVLPKPPGEFTAESPQSPDDTHQ
GTPGTEALSPLSPCSPRVNAEGFSSKNFATSASARVGRSRVPPVASSSRYSVRCRLYNTPMQAISEGETE
NSDGSPHDDRSSQSST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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