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Report for CCDS56653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56653.1 Public Mus musculus 1 Atf6 23 108 98 CCDS HistoryNCBI Gene:226641Re-query CCDS DB by CCDS ID:56653.1Re-query CCDS DB by GeneID:226641See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56653.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027974.6 ENSMUSP00000027974.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027974.6Link to Ensembl Protein Viewer:ENSMUSP00000027974.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027974Re-query CCDS DB by Protein ID:ENSMUSP00000027974
Original member Current member NCBI NM_001081304.1 NP_001074773.1 Accepted alive Link to Nucleotide Sequence:NM_001081304.1Link to Protein Sequence:NP_001074773.1Re-query CCDS DB by Nucleotide ID:NM_001081304Re-query CCDS DB by Protein ID:NP_001074773Link to BLAST:NP_001074773.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074773.1 656 F6VAN0 656 100% 0 0

Chromosomal Locations for CCDS 56653.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 170709879 170710087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170747106 170747190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170787346 170787460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170788608 170788675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170793957 170794056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170794657 170794770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170799614 170799745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170815423 170815514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170819247 170819432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170834820 170835040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170840681 170840884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170841686 170841812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170849117 170849217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170852905 170852992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170855113 170855189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170867650 170867701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1971 nt):
ATGGAGTCGCCTTTTAGTCCGGTTCTTCCTCATGGACCAGATGAAGACTGGGAGTCGACGTTGTTTGCTG
AACTTGGCTATTTCACAGACACTGATGATGTGCACTTTGATGCAGCACATGAGGCTTATGAAAATAATTT
TGATCATCTTAATTTTGATTTGGATTTGATGCCTTGGGAGTCAGACCTATGGAGCCCCGGCAGCCACTTC
TGCTCAGACATGAAGGCAGAGCCCCAGCCTCTTTCTCCGGCTTCCTCCAGTTGCTCCATCTCCTCTCCTC
GGTCCACAGACTCGTGTTCTTCAACTCAGCACGTTCCTGAGGAGTTGGATTTGTTGTCTAGTTCTCAGTC
CCCCCTTTCCTTATATGGCGACAGCTGTAATAGCCCCTCCTCTGTAGAGCCACTGAAGGAAGAGAAGCCT
GTCACTGGTCCTGGAAACAAAACAGAACATGGACTGACTCCAAAGAAAAAAATTCAGATGAGTTCAAAAC
CTTCAGTTCAGCCCAAGCCTTTATTACTTCCAGCAGCGCCCAAGACTCAAACCAATGCCAGTGTCCCAGC
AAAAGCCATCATCATTCAGACACTACCAGCCCTTATGCCACTGGCAAAGCAGCAGTCGATTATCAGCATA
CAGCCTGCGCCCACCAAAGGCCAGACTGTTTTGCTCTCTCAGCCGACTGTGGTTCAACTTCAGAGCCCTG
CGGTTCTGTCGTCTGCTCAGCCGGTTCTTGCAGTCACTGGGGGAGCCGCACAGCTACCTAACCATGTGGT
GAATGTGCTGCCAGCCCCTGTGGTGAGCAGCCCGGTGAATGGAAAACTTTCCGTGACTAAACCTGTTCTA
CAAAGTGCCACCAGAAGTATGGGTTCGGATATCGCTGTGCTGAGGAGACAGCAGCGGATGATAAAGAACC
GAGAGTCTGCTTGTCAGTCGCGCAAGAAGAAGAAAGAGTATATGCTAGGACTGGAGGCCAGGCTCAAGGC
TGCCCTCTCAGAGAATGAGCAGCTGAAGAAGGAGAATGGCTCCCTGAAGCGACAGCTGGACGAGGTGGTG
TCAGAGAACCAGAGGCTCAAAGTCCCAAGTCCAAAGCGAAGAGCTGTCTGTGTGATGATAGTATTAGCAT
TTATAATGCTGAACTATGGGCCCATGAGCATGCTGGAGCAAGAATCCCGAAGAGTGAAACCTAGTGTGAG
CCCTGCCAATCAGAGGAGGCATCTCTTGGAATTTTCAGCAAAAGAAGTTAAAGACACATCAGATGGTGAC
AACCAGAAAGACAGTTACAGCTATGATCACTCTGTGTCCAATGACAAAGCTTTAATGGTGCTAAGTGAAG
AGCCATTGCTTTATATGCCTCCACCTCCATGTCAACCCCTGATTAACACAACAGAGTCTCTCAGGTTGAA
CCATGAACTTCGAGGCTGGGTTCATAGACATGAAGTGGAAAGGACCAAATCTAGAAGAATGACAAATAGC
CAACAGAAAGCCCGCATTCTCCAGGGTGCTCTGGAACAGGGCTCTAATTCTCAGCTGATGGCTGTCCAGT
ACACAGAAACCACTAGCATCAGTAGGAATTCTGGGAGTGAGCTGCAAGTGTATTACGCCTCCCCTGGAAG
TTACCAAGGCTTCTTTGACGCCATCCGCAGGAGGGGAGATACGTTTTACGTTGTCTCATTTCGAAGGGAT
CATCTGCTATTACCAGCTACCACCCACAACAAGACCACAAGACCAAAAATGTCAATTGTATTACCAGCAA
TAAACATAAATGATAATGTGATCAATGGGCAGGACTATGAAGTAATGATGCAGATTGACTGTCAGGTGAT
GGACACCAGGATCCTCCACATCAAAAGCTCCTCGGTTCCCCCTTATCTCCGGGATCATCAGCGGAACCAA
ACCAGCACCTTCTTTGGTTCCCCTCCAACAACCACAGAGACGACCCATGTGGTCAGCACCATCCCTGAGT
CGTTGCAGTAG

Translation (656 aa):
MESPFSPVLPHGPDEDWESTLFAELGYFTDTDDVHFDAAHEAYENNFDHLNFDLDLMPWESDLWSPGSHF
CSDMKAEPQPLSPASSSCSISSPRSTDSCSSTQHVPEELDLLSSSQSPLSLYGDSCNSPSSVEPLKEEKP
VTGPGNKTEHGLTPKKKIQMSSKPSVQPKPLLLPAAPKTQTNASVPAKAIIIQTLPALMPLAKQQSIISI
QPAPTKGQTVLLSQPTVVQLQSPAVLSSAQPVLAVTGGAAQLPNHVVNVLPAPVVSSPVNGKLSVTKPVL
QSATRSMGSDIAVLRRQQRMIKNRESACQSRKKKKEYMLGLEARLKAALSENEQLKKENGSLKRQLDEVV
SENQRLKVPSPKRRAVCVMIVLAFIMLNYGPMSMLEQESRRVKPSVSPANQRRHLLEFSAKEVKDTSDGD
NQKDSYSYDHSVSNDKALMVLSEEPLLYMPPPPCQPLINTTESLRLNHELRGWVHRHEVERTKSRRMTNS
QQKARILQGALEQGSNSQLMAVQYTETTSISRNSGSELQVYYASPGSYQGFFDAIRRRGDTFYVVSFRRD
HLLLPATTHNKTTRPKMSIVLPAININDNVINGQDYEVMMQIDCQVMDTRILHIKSSSVPPYLRDHQRNQ
TSTFFGSPPTTTETTHVVSTIPESLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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