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Report for CCDS38425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38425.1 Public Mus musculus 3 Sclt1 23 108 98 CCDS HistoryNCBI Gene:67161Re-query CCDS DB by CCDS ID:38425.1Re-query CCDS DB by GeneID:67161See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38425.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026866.14 ENSMUSP00000026866.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026866.14Link to Ensembl Protein Viewer:ENSMUSP00000026866.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000026866Re-query CCDS DB by Protein ID:ENSMUSP00000026866
Original member Current member NCBI NM_001081411.1 NP_001074880.1 Accepted alive Link to Nucleotide Sequence:NM_001081411.1Link to Protein Sequence:NP_001074880.1Re-query CCDS DB by Nucleotide ID:NM_001081411Re-query CCDS DB by Protein ID:NP_001074880Link to BLAST:NP_001074880.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074880.1 688 G5E861-1 688 100% 0 0

Chromosomal Locations for CCDS 38425.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 41627172 41627234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41629518 41629613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41631653 41631731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41647445 41647641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41657204 41657396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41661572 41661717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41663952 41664026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41667111 41667182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41671385 41671483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41675328 41675505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41681696 41681787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41682282 41682372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41703386 41703456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41709469 41709534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41711083 41711205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41717729 41717864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41727093 41727148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41730291 41730363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41730861 41730919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41734168 41734235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41741995 41742028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2067 nt):
ATGGCCACAGAAATCGACTTACTGAGAGACCAAAAAGATAAACTAAATGATATTCTTAGGCAGCATCAAA
TCGAACATATTTTCAGAGACCCAACTATGCAGAACAGCATGTCCAAAGGAGGCAGAGGTGACACACTAGT
AGACTCAATAAATGAGCAAAGTTCTTTACCTCCTCTCATTGCTGAGTATGAGAAACATCTGGAAGAGCTA
AACAGGCAGCTGACCTATTACCAGAAGCACATGGGTGAGATGAAACTACAACTTGAAACTGTCATCACAG
AAAATGAAAGGTTGCACAGTAAATTAAAAGATGCTGTTGAAAAGCAATTGGAAGCCCTTCCCTTTGGCAC
AGGGATAGGAAATGACATCTGTGCAGATGATGAGACCGTGAGGATCCTTCAAGAACAATTGCAACTAGCC
AATCAAGAGAAAACTTGGGCTCTGGAACTCTGGCAGACTGCTTCTCAGGAGTTGCAAAGTGTACAGAAAC
TCTATCAGGAGCATATGACTGAAGCCCAGATTCATGAATTTGAAAACCGAAAGCAAAAAGATCAGCTGAA
CAATTTTCAACAACTAACCAAGAAACTCCATGTTGCTAATGAGAACATAGAAATGACTAACCACCACTTC
CTGAAAACAGTAACTGAACAAAACATGGAGATTGAGAAACTTCGAAAACATCTTAGGCAAGCCAGATTAG
ATCTGAGAGTTGCAGTATCGAAAGTGGAAGAGTTAACTAAAGTGACTGAAGGTCTTCAAGAGCAGATGCT
GAAGAAGGAGGAAGATATTATGTCTGCACAAGGAAAAGAAGAAGCGTCGGATAGACGAGTACAGCAGTTA
CAATCTAGTATAAAACAGTTAGAGTCAAGATTGTGTGTAGCAATTGAAGAAGCCGATGTACTAAAAACAG
GGAAATCAAATTTGGAAAAGCAAATCAAAGAACTACAAGCAAAATGTAGTGAATCAGAAAATGAGAAATA
TGAGGCTATTTCAAGAGCCAGAGATAGCATGCAGCTCTTAGAAGAAGCTAACATTAAACAAAATCAGATT
CTCCTTGAAGAGAAACAAAAAGAGGTTGACAGAGAAAAAATGAAGAAAACAATGTCTCAGCTTATACAAG
ATGCAGCTATCAAAGCAAGGAAAGAGGTTGAAAGCACAAAAAAACAATATGAAATTCTGATTTCACAATT
AAAGGAAGAACTCTCAACCCTTCAAATGGACTGTGATGAAAAGCAAGGTCAAATTGATCGAGCCATTAGA
GGGAAAAGAGCCGTGGAAGAAGAACTGGAGAAGATTTACCGTGAAGGCAAACAGGATGAAAGTGATTACA
GAAAATTGGAAGAAATGCATCAAAGATGTCTTGCTGCAGAACGTTCAAAAGATGATCTTCAGCTAAGACT
CAAGAGTGCAGAAAATAGAATAAAACAACTTGAAATTAATTCCTCAGAAGAGATGTCACGTTCCCATGAA
ATGATCCAGAAACTTCAAACTGTATTGGAGTCAGAGAGGGAGAACTGTGGCTTTGTCAGCGAGCAGAGGC
TGAAGCTTCAGCAGGAAAACGAGCAACTACAGAAGGAGACCGAGGATCTCAGAAAAGTTGCTCTGGAGGC
CCAAAAAAAAGCAAAATTAAAGGTCAGTACAATGGAGCATCAGTTCTCAATTAAGGAGCATGGGTTTGAA
GTTCAGCTGAGAGAAATGGAGGACAGTAATCGGAATTCCATTGTTGAACTGAGGCATCTTTTGGCAGCTC
AACAAAAGACAGCCAATAGGTGGAAAGAAGAAACCAAGAAACTTACTGAAAGTGCAGAAATGAGGATCAG
CAGTCTAAAGAGTGAGCTGAGCCGACAGAAGCTTCATACCCAGGAGCTACTTTCTCAACTGGAAATGGCA
AATGAAAAGGTGGCTGAGAATGAAAAGTTAATTCTGGAACATCAAGAAAAAGCAAACAGACTTCAAAGGC
GTCTAAGTCAGGCAGAAGAGAGAGCTGCTTCAGCGTCCCAGCAGCTCAGTGTGATTACAGTGCAGAGAAG
AAAAGCAGCTTCCATGATGAATCTGGAAAATATTTAA

Translation (688 aa):
MATEIDLLRDQKDKLNDILRQHQIEHIFRDPTMQNSMSKGGRGDTLVDSINEQSSLPPLIAEYEKHLEEL
NRQLTYYQKHMGEMKLQLETVITENERLHSKLKDAVEKQLEALPFGTGIGNDICADDETVRILQEQLQLA
NQEKTWALELWQTASQELQSVQKLYQEHMTEAQIHEFENRKQKDQLNNFQQLTKKLHVANENIEMTNHHF
LKTVTEQNMEIEKLRKHLRQARLDLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQL
QSSIKQLESRLCVAIEEADVLKTGKSNLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQI
LLEEKQKEVDREKMKKTMSQLIQDAAIKARKEVESTKKQYEILISQLKEELSTLQMDCDEKQGQIDRAIR
GKRAVEEELEKIYREGKQDESDYRKLEEMHQRCLAAERSKDDLQLRLKSAENRIKQLEINSSEEMSRSHE
MIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDLRKVALEAQKKAKLKVSTMEHQFSIKEHGFE
VQLREMEDSNRNSIVELRHLLAAQQKTANRWKEETKKLTESAEMRISSLKSELSRQKLHTQELLSQLEMA
NEKVAENEKLILEHQEKANRLQRRLSQAEERAASASQQLSVITVQRRKAASMMNLENI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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