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Report for CCDS38558.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38558.1 Public Mus musculus 3 Ankrd35 23 108 98 CCDS HistoryNCBI Gene:213121Re-query CCDS DB by CCDS ID:38558.1Re-query CCDS DB by GeneID:213121See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38558.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048427.8 ENSMUSP00000047244.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048427.8Link to Ensembl Protein Viewer:ENSMUSP00000047244.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000048427Re-query CCDS DB by Protein ID:ENSMUSP00000047244
Original member Current member NCBI NM_001081139.1 NP_001074608.1 Accepted alive Link to Nucleotide Sequence:NM_001081139.1Link to Protein Sequence:NP_001074608.1Re-query CCDS DB by Nucleotide ID:NM_001081139Re-query CCDS DB by Protein ID:NP_001074608Link to BLAST:NP_001074608.1
Original member Current member NCBI NM_001356538.1 NP_001343467.1 Accepted alive Link to Nucleotide Sequence:NM_001356538.1Link to Protein Sequence:NP_001343467.1Re-query CCDS DB by Nucleotide ID:NM_001356538Re-query CCDS DB by Protein ID:NP_001343467Link to BLAST:NP_001343467.1

Chromosomal Locations for CCDS 38558.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 96670411 96670449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96678133 96678263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96679180 96679268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96679630 96679694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96680471 96680528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96680627 96680697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96680962 96681068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96682027 96682211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96682994 96683031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96683183 96685174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96689146 96689235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96689445 96689510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96690192 96690251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2991 nt):
ATGAAGCGCATCTTCTCCTGCTCCAGTTCACAAGTGGCGGTGGAGAAATGGAACCGACGTGATCAGAAGC
TGCTGGAGGCGGTGCAGCGGGGGGACGTGGGACGCGTGGCTGCCTTGGCCTCTAGGAAGTCAGCCCGACC
CACCAAACTAGACTCAAATGGCCAGTCCCCGTTCCATCTGGCAGCCTCCAAAGGCCTGACAGAGTGTCTG
ACAATACTGCTTGCAAATGGGGCTGATATCAACAGCAAGAACGAGGACGGAAGCACTGCCCTTCATTTGG
CCACCATCTCCTGTCAGCCACAGTGTGTGAAGGTCTTGCTTCAGCACGGTGCTAATGAAGATGCTGTGGA
TGCAGAAAATCGCAGTCCATTACACTGGGCAGCCTCCTCTGGCTGCGCCTCAAGTGTCCTCCTGCTGTGT
GACCACGAAGCCTTCCTGGACGTGCTGGATAATGATGGACGCACACCCCTGATGATTGCATCGCTGGGTG
GTCATGCAGCTATCTGCTCACAGCTGTTGCAGAGAGGTGCCCGAGTTAATGTCACAGACAAGGATGACAA
ATCAGCTTTGATCCTGGCCTGTGAGAAAGGCAGCGCTGAGGTGGCCGAGCTGCTCCTGAGCCATGGAGCG
GACGCTGGAGCGGTGGACAGTTTGGGACACAACGCTCTTCATTATGCTTTGCGTACACAAGACAAGGAGC
TGTGGAGGCTGTTACAGCAGGCCCTGAACCGGCGGCGGAGAGGCGGTCATGGACTGGTTCAACACCCAGA
TCACCCATCTCAGGCCTCTTCATGTGAGCCTCGGGTGGGATCTCCTCCTAAGAACTCACGGAAAGTGGAG
CCTGAGGAAGAGCAGGAGGAGGAGGGGGAGGAGCGGTGCTCAGAAGAGTGGAGGTGGAAGTTCGAGGAGG
AGCAGAGGAAAGTTCATCAGCTGGAGCAGGAGCTCGTGCGAAAGACAGATGAGTGCAAGGCTCACGCTGC
AGCCTTCTCAAGCCTAGAGGAGCAGATTCGAGAGCAAGCGCAAGAACTAGGCCATCTCCTAGTGCAAGAA
CCGGGAGCTCCAGGAAATCAAGGCCCTGGTCTCCGGCCTGAGGGAGATGGTATGGAGGAGGGTTGTCCCC
TGAACCTGCTGGCTGAGCGGATCCAAGAGCTGAAGAAGCAGCAGAAGGCACTGGCTACAATAAACCCAAC
ATTAGTTCCCAAGAGAGCTGAAGAATTAGCCCCGGCTGAGATCCATCATGAAGTACACAGAAAGTCCCAA
CCAGAGCAGGGGCTGCCCCAGGGCCCAAGTTCAGAAACCACCGGGAAAGCCACAGGACAGCAACCAAACA
CCAATGGGGGGCAGAACCTTGGCCTCCAGAACACTGAGCAGGTGTGTGCTGGCCAGAAGGAGAGGACCCC
AGCTCCAGGGACTGAAACAGCAGGCACAGTGGGAGAACCAGTGGGCATAGCCATGAATCAGCTCCTCCTA
CAGCTAAGGGAAGAGCTGGCTGCAGTGTGGCGAGAAAAGGATGCTGCCAGAGGGGCTTTGTCAAGACCAG
TTCTGGAGGGAGCCCTGGGGACTCCCAGAGCTGAGGCTGCAGCAGCTGCCTGGGAAAAGATGGAAGCCAG
GCTTGAGAGGGTGCTGGTAAGGTTAGATGGAGCAAAGATGGGACTGCATGTGAAACCTGAGGTCCCTGTC
CAGGGGTCCAGAGACGGAGCCCCGAAGGCAGTCCCGGGATGCTCTAAAGAGCAGGAAGAAAAGAAGGCTC
TTGGAACCAGAGGAGAGCCCTTAGGGGCCCCTGGAAAAGAACAGGCCTTAGGAGGAGGCCTGGCAAAGGG
ACAGCTGGAGAAAGAGGTGTCAGCTTTGAGACTGAGCAATAGCAACTTGCTGGAGGAATTGGGAGAGTTG
GGGCGCGAGAGACAACGCTTGCAGGGAGAGCTGCAGTCCTTGACCCAGAGGCTACACCGGGAGTTTGTGC
CCAAGCCCGAGGCACAGGTCCAGCTACAGCAGTTGCGGAGGAGCGTGGGGATGTTGACAGAGGAACTGGC
CATGGAGAAGGAGGCCACAGATAAGCTGCGCAGGCTACTGGCCTCCCAGACTAGCGGCCTCCAAGGACTG
TGGAAATGCCTACCCCCAGACCTCGTGGGCAAGGGGAATACACAGAGTACAGCTGCAGAACCCCTGGAGG
AGCTGCAGGCCTGCATCAGCACCCTGGTGGATAGGCACCTTGAGGCTCAACGGGTGCTGGCTCGGTTGGA
AGAGGAAAACCAGCAGCTGAGGGGATCCTTGGCTCCCTGTGGGGAACCAGAGGCCTCCCTCAAGGTTACA
GCATCCCCGCAAGTGGCCGCCCTGGAGGAAGATCTGGGAATGCTAGAGGAAGAGCTACGGGCCGTGCAGG
CCACGATGAGTGGGAAGAGCCAGGAGATTTGCAAGCTGAAACAACTGCTCTACCAAGCCACGGAAGAAGT
GGCCGAGCTGAGAGCTCGGGAAGCAGCCAGCCTGCGCCAGCACGAGAAGACGCGAGGCTCGCTGGTGGCC
CAGGCACAGGCTTGGGGCCAGGAGCTCAAAGTCGTGCTGGAGAAGTACAACACAGCCTGTCGGGAAATGA
CTCGATTGCGGGACACTGTGGCGGAGGAACGTCGCCGCAGCGAGGACCTGGCGGCTAGGGCGGCGGAGCA
GGAGCGCCAGGCTGGCGAGATGCGCGGGCGCTCGGAGCAGTTCGAGAAAACTGCTGAGCTCCTGAAAGAG
AAGACAAACCACCTCATCGGGGCTTGCCGGGACAAGGAAGCCAAGATCAAGGAGTTGCTGAAGAAGCTCG
AGCAGCTTTCGGAAGAAGTTCTAGAAGTCCGGGGCGAGAATGCCCACCTCGCCCTACAGCTGCAGGACTC
CCAGAAGAACCACGAAGAGATCATCTCCACATACAGGAGTCATCTACTGAATGCTGCTCGGGGCTACATG
GAACAAGACGTCTACAACATCCTACTTCGAATCCTCAGCATGCAGGAGTGA

Translation (996 aa):
MKRIFSCSSSQVAVEKWNRRDQKLLEAVQRGDVGRVAALASRKSARPTKLDSNGQSPFHLAASKGLTECL
TILLANGADINSKNEDGSTALHLATISCQPQCVKVLLQHGANEDAVDAENRSPLHWAASSGCASSVLLLC
DHEAFLDVLDNDGRTPLMIASLGGHAAICSQLLQRGARVNVTDKDDKSALILACEKGSAEVAELLLSHGA
DAGAVDSLGHNALHYALRTQDKELWRLLQQALNRRRRGGHGLVQHPDHPSQASSCEPRVGSPPKNSRKVE
PEEEQEEEGEERCSEEWRWKFEEEQRKVHQLEQELVRKTDECKAHAAAFSSLEEQIREQAQELGHLLVQE
PGAPGNQGPGLRPEGDGMEEGCPLNLLAERIQELKKQQKALATINPTLVPKRAEELAPAEIHHEVHRKSQ
PEQGLPQGPSSETTGKATGQQPNTNGGQNLGLQNTEQVCAGQKERTPAPGTETAGTVGEPVGIAMNQLLL
QLREELAAVWREKDAARGALSRPVLEGALGTPRAEAAAAAWEKMEARLERVLVRLDGAKMGLHVKPEVPV
QGSRDGAPKAVPGCSKEQEEKKALGTRGEPLGAPGKEQALGGGLAKGQLEKEVSALRLSNSNLLEELGEL
GRERQRLQGELQSLTQRLHREFVPKPEAQVQLQQLRRSVGMLTEELAMEKEATDKLRRLLASQTSGLQGL
WKCLPPDLVGKGNTQSTAAEPLEELQACISTLVDRHLEAQRVLARLEEENQQLRGSLAPCGEPEASLKVT
ASPQVAALEEDLGMLEEELRAVQATMSGKSQEICKLKQLLYQATEEVAELRAREAASLRQHEKTRGSLVA
QAQAWGQELKVVLEKYNTACREMTRLRDTVAEERRRSEDLAARAAEQERQAGEMRGRSEQFEKTAELLKE
KTNHLIGACRDKEAKIKELLKKLEQLSEEVLEVRGENAHLALQLQDSQKNHEEIISTYRSHLLNAARGYM
EQDVYNILLRILSMQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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