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Report for CCDS52441.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52441.1 Public Mus musculus 7 Phrf1 23 108 98 CCDS HistoryNCBI Gene:101471Re-query CCDS DB by CCDS ID:52441.1Re-query CCDS DB by GeneID:101471See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52441.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106027.8 ENSMUSP00000101648.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106027.8Link to Ensembl Protein Viewer:ENSMUSP00000101648.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106027Re-query CCDS DB by Protein ID:ENSMUSP00000101648
Original member NCBI NM_001081118.1 NP_001074587.1 Updated not alive Link to Nucleotide Sequence:NM_001081118.1Link to Protein Sequence:NP_001074587.1Re-query CCDS DB by Nucleotide ID:NM_001081118Re-query CCDS DB by Protein ID:NP_001074587
Current member NCBI NM_001081118.2 NP_001074587.1 Accepted alive Link to Nucleotide Sequence:NM_001081118.2Link to Protein Sequence:NP_001074587.1Re-query CCDS DB by Nucleotide ID:NM_001081118Re-query CCDS DB by Protein ID:NP_001074587Link to BLAST:NP_001074587.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074587.1 1682 A6H619-1 1682 100% 0 0

Chromosomal Locations for CCDS 52441.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141231249 141231342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141232419 141232541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141237497 141237702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141240885 141240968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141243778 141243896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141246847 141246944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141247221 141247396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141248380 141248509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141254864 141254991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141256498 141256679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141256803 141256922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141257344 141257498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141258032 141260707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141260960 141261114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141261213 141261542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141261776 141261904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141262409 141262552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5049 nt):
ATGGATGACGACAACTTGGATGAGCTTGTGGCGCACAGCCCTGGGCCAGATGGACCCCCACGGGTTGGCT
CCTCAGAACTGGCCAGTGATGCTGAAGAAAGCAGCAATGGCCAAAGTGGAGACTCTGAAGATGATACAGG
CAGTGAGCAGGATGATGACACAGATGGGGAGGAAACAGAGGGGCTGTCTGAAGAGGAAGACCCAGAGGAT
AGATCTGGTTCTGAAGACTCAGAAGATGGAGTAGAAATGGCAACGGCAGCAATAGAGACTCAAGGGAAGC
TTGAAGCTAGCAGTGTACCCAATTCTGATGATGATGCAGAGAGCTGCCCCATTTGCCTCAATGCATTTAG
AGACCAGGCTGTGGGCACCCCAGAGACCTGTGCCCATTATTTCTGCCTGGATTGCATCATCGAATGGTCC
AGGAATGCCAACTCCTGTCCTGTTGATCGAACAGTATTTAAATGTATTTGTATTCGTGCCCAGTTTAATG
GTAAAATCTTAAAGAAGATTCCAGTAGAAAACACTAAAGCTTGTGAGGCTGAGGAGGAAGACCCGACTTT
TTGTGAGGTGTGTGGCAGGAGTGATCGTGAGGACCGGCTCCTACTGTGTGACGGCTGCGATGCTGGGTAC
CACATGGAATGTTTGGACCCGCCTCTCCAGGAGGTGCCTGTGGATGAATGGTTCTGCCCAGAGTGTACGG
TCCCTGGTGTGGATCCCACTCATGATGCAGCTCCTGTGAGTGATGAGGAGGTCTCCTTGCTACTGGCTGA
TGTAGTACCTACTACAAGCAGGCTTCGGCCTCGAGTAGGCAGGACCCGGGCCATCGCTAGGACACGGCAG
AGTGAGAGAGTGAGGGCAACTGTGAACCGGAACCGGATCTCCTCTGCCAGAAGGGTCCAGCATGTGCCAA
GGTACCTCATGTCTTCTCTGCTGGATGAAACTATTGAGGCTGTCGCCACTGGGCTGAGCACTGCTGTATA
CCAGCGTCCCTTGACACCTCGTGTCCCTGCAAAACGGAAAAGGAAGGCAGGGAGACGAAAGAAAGTGCTG
GGAAGAAAGAAAACTCGGTCCAGGTCATCTGTGAAAAGTAAGAGTGGGAGTACGAGAGCCAAGAAACGTC
AGCACCGTGTAAGGAAGACAAAAGGGAGGAAGCTGAAGAATGAAGTCACAGCTCGTTCTCGAATTGCACG
AACACTAGGCCTCCGCAGGCCTGTCCGTGGCACCAGCATGCCATCAGTGTACAAGCCAGTGGACCCCTCC
CTCGGGCTGATGAGGGCAGACATTGGAGCAGCTTCCCTGTCACTGTTTGGAGATCCCTATGAGCTGGATC
CTTTTGACAGCAATGAAGAACAGTCTGCAGATCCACCTTCCCCTCTGAGTGCCAAGAGGAGAGTGCTGTC
CCGCTCAGCTCTGCAGTCTCACCAGCCTGTGGCCAGACCTGTCGCCATGGGGCTCTCTAGGAGGCAGCTC
CCTGCTGTGGCCCCAGAGCCCAGCGTGGAGGAGGCCCCCGTTCCTGACCTGTTGGGAAGCATCCTGTCTG
GCCAGAGCCTCCTGATGATGAGCAGTGCTGATGTTGTCATACACCGGGATGGCTCTCTCAGCGCCAAGAG
GGCAGCTCCTGTTTCTCTTCAGCGAAATTCTGTGACTCAATCCAGAGAAGAGTCCAGGCTCAGAGACAAC
CCGCAGCCTGGGGCACTACCCTCAGAGAGTGCATCTGGTGGATTCGTGGGAGACAGACAACCAAACTCAG
GGCTGAGCTGTGGGAATAGAACAGCTCTGTGCTGTCTCCCTGCCCGCATTGCCCAGACACCTGTGAGGTC
AGATCCCTCACTGACTCCTCGCTCAGGTCTGTCTAGGACCCTTTCAGATGAGAACAGGCCCAGCCGGACA
CACAGCAGCAGCCCCCAACTCAATGGCTCCAATGTACGGGTTAGTTCTGCCTCGACTAAGATCGTGACTC
ATTCTAGCTTTCCATCGAAAAATACAGCTTCTGGGCTTCCTCAGAGAACAGGTCCCAGGAGACCTGATTT
CTCCAAGCTACCCAGGATACCAAAGATCCATCGGGATGGCAATAAGAGCACGCAGGACCAGGCCCCAGCC
AGCGGCCACATTGTCGAGCTCCCTAGCACTTGCATCAGCCGCCTGACTGGCAGGGAAGGCCCTGGGCAGC
CAGGACGAGGCCGAGTCGACAGTGAGCCAAGCAGCAGGGGTCCCCAGGAGACTGGCTCACACACAAGTGG
TTCTCGACCTCCTGCGCCCAGCTCCCATGGCAGCTTAGCCCATCTAGGGCCCTCAAGAGGAAAGGGCATT
GGGTCTAGCTTTGAAAGTTTCCGGATCAACATCCCTGGGAACACTGCACATTGCAGCCAGCTGTCCAGCC
CTGGATTCTGTAACACGTTCCGGCCGGTAGACAGCAAGGTGCAGAGGAAGGAGACCCCGTTCCCCCTCTT
CTCCATCAAGAAGCCGAAACAACTCAAAAGCGAAATCTATGACCCCTTTGACCCCACTGGCTCGGACTCT
AGCCCTCCTAGCAGCAGCCCAGAGAGTCTTGGTCCAGGCCTCCTACCCTCTGAGATCACAAGAACTATCT
CCATCAACAGCCCAAAGGCCCCAGCCTTCCAGACTGTGCGCTGTGTTACCTCCTACAGGGTAGAAAGCAT
CTTTGGGACTGAGATGGAACCTGAGCCCCAGCCCCCTAGTGAGCCTGTATCTGGCATGCTGGAGTTACTC
AGCAAGGGATCTGCTGAGGGAACCTCTGATTTGGAGCAAGAGGGACTAGGGGAAATAGAGCCTACAGAGA
TTCGGGGCTCCACAGCCCGGACACAGAGGCCACCCCCACCAGACCCTTGGGATGATGAGGACGAAGTGTC
CTGTACACCCTTCTTTGGCTCTGAGGAACGGACAGTGACGTGTGTGACTGTTGAGGAGCCAGGTGTTCTA
CCAAGCCCAGATGCTCCACAGATCACCACCCACAGAATTGTGGAGTTCAGGGCCTCATCCCGTTCCCGCT
CCACCTCCAGCTCCCGAAGCAGGAAGAAAACGAAGAAGAAGAAGAAAAAGGTTGCCAGAGAGCACCAGAG
GACACGCTCCAGCACTCGCTCTGGCTCCAGGGACAGGACTTCACGCTCAGTATCTCCAGTTGCTGAGGAA
CACACCAGGAGGCACAGAGCCAAGACTAAGAGCCGGAGGTCTTCCAGTGACCGTGCCAGCAGCCAGGACA
GAGCAAAGAGGAGGAAGGACAGAGACGACAGAGACAGGGAGCATAGGCGGGGTTCCTGGGGTCATGGCAG
GTGCCGGCGGAAGTCCAGGTCTCGCTCAGGGAGCCCTGGCAGTTCTTCCTGTGAGCGCCATGAGAGTAAG
AGACGGAAGAGGCGACATTCGGGGTCCAGGTCTCGGGGCAGCAGTCTGGAGAGGGACCGGAGACACAAAC
ATCGGGAGAGGAGCCGAGAGCGAATGGACAAGCAGGAGAGTGTGACCCGGTCCCGGGAGAGGAGGAGGTG
GCGATCTCGGTCGCCTAGCTTGGAGCATAGGCCACGAAGGCCACCTTCCCGTGAGAAGCGTGCCCATTCC
CCAGAGAAAAAGGGGCCTGTGAGGGAGGTTTCCCCAGCCCCTGCTACACAGGGGGAGTCGAGGCAGGATG
GAGACCACTCTGCTGAGCCTCCGGTTTCAGAAGTAAGTGTCTTGCCTGAGGTAGTAAGTGTCCTGCCAGA
GGTGGTTGTGGCTGACCTGAACCCTCCAGAAGTCCCTCCTGTCCTGGCAGAGCCAGTTGCCCATGTGCCT
GAGGACCTGGACTATGGTGAGTCTGTGGAGGCAGGCCACGTCTTTGAGGATTTTTCAAATGAAGCCATCT
TCATCCAGCTCGATGACATGAGCTCGCCTCCTTCTCCTGAGAGTACAGACTCCTCCCCTGAGAGAGACTT
CCCACCAAATCCCATACTGCCCCCAGCCAGCCTTCCACAAGACAGTACTTTACCTACCATCCAAAGGGAG
GTGTTACCCATTCACAGTGAAGATATCTCAAAGCCTGTGCCCCAGGCCTTGGCCCCATCAGACCAGAGTC
TGCTCAAGCAAGACACTGTAGAGATCACCACTACAACTCCCAGCACCCCAGCTGTGGTGCCCATGACAAA
GGACAGTCCGGTGCTGAGTGCAAGAGGATGGGAAGCAGTCAGGCCCAGGGATGCTGTGGCCCAGGCCCCA
CTGCTACGATCCCGAACCCTGGTGAAAAGAGTCACCTGGAACCTGCAGGAAGCAGAACACAGCACGCCAG
CAGCCCTGGACAGAGATCCAAGGACACCACTTCAGAGGCCCCAGAGGCCCCAGGAAGGAGACTGGGATGC
AGAGGACAGGGCCCTCATAGGATTTCAGCAGGCACCATTCTCCGAGCTGCCCCCTCCCATCCACGTGCTC
CAGGAGTCTGGGTTACCTGATGCAGATCCCTCTCAGCCCCCTGGTGCTCCCAGGGCAGAAGGGCTTCCAG
CTGCTGGGACTCTGCACTCAGCAGGGGGTATTCTTGCCCAGGTTTACAGCCCCAACATGCCACCACCCTT
GGCTCAGCCCTCAAGCATCCTGCCCTATGCACTGGTCAGCCAGCCCTCAGTCCAGTTGATCCTGCAGGGG
ACCCTTCCCCTAGCAGGCTGCGGTACAGCACAGAGCCTGGCACCAGTGCCCACAATGCCAGCTACAGTCT
CAGAGCTAGCTGTTCCAACCACCAACAACTCAGAAGAAAGGACTGCTACTCCCAAAACAGCTGCTGAGAA
GACCAAAAAGGAGGAGTACATGAAGAAGCTGCACATGCAAGAACGGGCTGTGGAGGAGGTGAAGCTGGCC
ATTAAACCCTTCTACCAGAAGAGAGAAGTGACCAAGGAGGAGTACAAGGACATACTGCGCAAAGCCGTGC
AGAAGATCTGCCACAGCAAGAGTGGTGAAATCAACCCTGTAAAGGTGGCCAACCTGGTGAAGGCCTATGT
GGACAAATACAGGCATATGCGCAGACACAAGAAGACTGAAGGTGGAGAGGAGCCACCCACTCAGGGTGCT
GAGACCTGA

Translation (1682 aa):
MDDDNLDELVAHSPGPDGPPRVGSSELASDAEESSNGQSGDSEDDTGSEQDDDTDGEETEGLSEEEDPED
RSGSEDSEDGVEMATAAIETQGKLEASSVPNSDDDAESCPICLNAFRDQAVGTPETCAHYFCLDCIIEWS
RNANSCPVDRTVFKCICIRAQFNGKILKKIPVENTKACEAEEEDPTFCEVCGRSDREDRLLLCDGCDAGY
HMECLDPPLQEVPVDEWFCPECTVPGVDPTHDAAPVSDEEVSLLLADVVPTTSRLRPRVGRTRAIARTRQ
SERVRATVNRNRISSARRVQHVPRYLMSSLLDETIEAVATGLSTAVYQRPLTPRVPAKRKRKAGRRKKVL
GRKKTRSRSSVKSKSGSTRAKKRQHRVRKTKGRKLKNEVTARSRIARTLGLRRPVRGTSMPSVYKPVDPS
LGLMRADIGAASLSLFGDPYELDPFDSNEEQSADPPSPLSAKRRVLSRSALQSHQPVARPVAMGLSRRQL
PAVAPEPSVEEAPVPDLLGSILSGQSLLMMSSADVVIHRDGSLSAKRAAPVSLQRNSVTQSREESRLRDN
PQPGALPSESASGGFVGDRQPNSGLSCGNRTALCCLPARIAQTPVRSDPSLTPRSGLSRTLSDENRPSRT
HSSSPQLNGSNVRVSSASTKIVTHSSFPSKNTASGLPQRTGPRRPDFSKLPRIPKIHRDGNKSTQDQAPA
SGHIVELPSTCISRLTGREGPGQPGRGRVDSEPSSRGPQETGSHTSGSRPPAPSSHGSLAHLGPSRGKGI
GSSFESFRINIPGNTAHCSQLSSPGFCNTFRPVDSKVQRKETPFPLFSIKKPKQLKSEIYDPFDPTGSDS
SPPSSSPESLGPGLLPSEITRTISINSPKAPAFQTVRCVTSYRVESIFGTEMEPEPQPPSEPVSGMLELL
SKGSAEGTSDLEQEGLGEIEPTEIRGSTARTQRPPPPDPWDDEDEVSCTPFFGSEERTVTCVTVEEPGVL
PSPDAPQITTHRIVEFRASSRSRSTSSSRSRKKTKKKKKKVAREHQRTRSSTRSGSRDRTSRSVSPVAEE
HTRRHRAKTKSRRSSSDRASSQDRAKRRKDRDDRDREHRRGSWGHGRCRRKSRSRSGSPGSSSCERHESK
RRKRRHSGSRSRGSSLERDRRHKHRERSRERMDKQESVTRSRERRRWRSRSPSLEHRPRRPPSREKRAHS
PEKKGPVREVSPAPATQGESRQDGDHSAEPPVSEVSVLPEVVSVLPEVVVADLNPPEVPPVLAEPVAHVP
EDLDYGESVEAGHVFEDFSNEAIFIQLDDMSSPPSPESTDSSPERDFPPNPILPPASLPQDSTLPTIQRE
VLPIHSEDISKPVPQALAPSDQSLLKQDTVEITTTTPSTPAVVPMTKDSPVLSARGWEAVRPRDAVAQAP
LLRSRTLVKRVTWNLQEAEHSTPAALDRDPRTPLQRPQRPQEGDWDAEDRALIGFQQAPFSELPPPIHVL
QESGLPDADPSQPPGAPRAEGLPAAGTLHSAGGILAQVYSPNMPPPLAQPSSILPYALVSQPSVQLILQG
TLPLAGCGTAQSLAPVPTMPATVSELAVPTTNNSEERTATPKTAAEKTKKEEYMKKLHMQERAVEEVKLA
IKPFYQKREVTKEEYKDILRKAVQKICHSKSGEINPVKVANLVKAYVDKYRHMRRHKKTEGGEEPPTQGA
ET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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