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Report for CCDS35542.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35542.1 Public Mus musculus 1 Mitd1 23 108 98 CCDS HistoryNCBI Gene:69028Re-query CCDS DB by CCDS ID:35542.1Re-query CCDS DB by GeneID:69028See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35542.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027257.9 ENSMUSP00000027257.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027257.9Link to Ensembl Protein Viewer:ENSMUSP00000027257.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027257Re-query CCDS DB by Protein ID:ENSMUSP00000027257
Original member Current member EBI ENSMUST00000139725.7 ENSMUSP00000123009.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000139725.7Link to Ensembl Protein Viewer:ENSMUSP00000123009.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000139725Re-query CCDS DB by Protein ID:ENSMUSP00000123009
Original member Current member NCBI NM_001356262.1 NP_001343191.1 Accepted alive Link to Nucleotide Sequence:NM_001356262.1Link to Protein Sequence:NP_001343191.1Re-query CCDS DB by Nucleotide ID:NM_001356262Re-query CCDS DB by Protein ID:NP_001343191Link to BLAST:NP_001343191.1
Original member Current member NCBI NM_026913.3 NP_081189.1 Accepted alive Link to Nucleotide Sequence:NM_026913.3Link to Protein Sequence:NP_081189.1Re-query CCDS DB by Nucleotide ID:NM_026913Re-query CCDS DB by Protein ID:NP_081189Link to BLAST:NP_081189.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343191.1 249 Q8VDV8 249 100% 0 0
NP_081189.1 249 Q8VDV8 249 100% 0 0

Chromosomal Locations for CCDS 35542.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37879268 37879363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37879560 37879620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37880933 37881048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37881699 37881785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37882562 37882698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37885215 37885316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37890160 37890310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (750 nt):
ATGGCTAAGTCCAGCCTGGGACAGGATTCCGATAGCACTGCGGCGGTGGCGGTACTAAAGCGGGCAGTAG
AGCTGGATGCAGAGTCCCGGTACCAGCAGGCTCTGGTGTGTTACCAGGAGGGGATTGACATGCTCTTGCA
GGTTCTGAAAGGCACCAAAGAGTCCAGTAAAAGATGTGTTCTCAGAACGAAAATCTCCGGCTACATGGAT
AGAGCAGAAAATATAAAGAAATACTTAGATCAAGAAAAAGAAGATGGAAAATATCACAAGCAAATTAAAA
TAGAAGAGAATGCAACTGGCTTCAGTTACGAGTCACTCTTTAGAGAATACCTACACGAGACAGTTACAGA
AGTTTGGATAGAAGACCCTTATATTAGACAAACTCATCAGCTCTATAACTTCCTTCGGTTTTGTGAGATG
CTGATTAAGAAGCCGTGTAAAGTAAGAACCATTCACCTTCTCACCTCTGGGTATGAAGGTTTGGGGAACA
CACAGCAAAGTAGTGGCCTGGAAGAAATAAAGCAGTCCCTCGGGAGTCACGGAGTGGTGCTGGAAATAAA
CTACTCTTCATCTATACATGACCGAGAAATTAGGTTCAACAATGGATGGATGATTAAAATAGGAAGGGGC
CTTGATTATTTCAAGAAACCACAGGGTCGTTTTTCTCTTGGATATTATGATTTAGACTTGAGACCGTGTC
ATGAAACAACAGTGGACATATTTCACAACAAGCACACGAAAAAAATATGA

Translation (249 aa):
MAKSSLGQDSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMD
RAENIKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLHETVTEVWIEDPYIRQTHQLYNFLRFCEM
LIKKPCKVRTIHLLTSGYEGLGNTQQSSGLEEIKQSLGSHGVVLEINYSSSIHDREIRFNNGWMIKIGRG
LDYFKKPQGRFSLGYYDLDLRPCHETTVDIFHNKHTKKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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