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Report for CCDS88992.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88992.1 Public Mus musculus 17 Slc22a2 23 108 98 CCDS HistoryNCBI Gene:20518Re-query CCDS DB by CCDS ID:88992.1Re-query CCDS DB by GeneID:20518See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88992.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000233066.1 ENSMUSP00000156710.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233066.1Link to Ensembl Protein Viewer:ENSMUSP00000156710.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233066Re-query CCDS DB by Protein ID:ENSMUSP00000156710
Original member Current member NCBI NM_001355767.1 NP_001342696.1 Accepted alive Link to Nucleotide Sequence:NM_001355767.1Link to Protein Sequence:NP_001342696.1Re-query CCDS DB by Nucleotide ID:NM_001355767Re-query CCDS DB by Protein ID:NP_001342696Link to BLAST:NP_001342696.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342696.1 544 O70577-2 544 100% 0 0

Chromosomal Locations for CCDS 88992.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 12584281 12584694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12586778 12586881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12599057 12599211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12605926 12606094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12608305 12608419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12609966 12610072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12612389 12612603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12614714 12614822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12615235 12615347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12619788 12619887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12623626 12623659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGCCGACCGTGGATGATATTCTAGAACATATAGGGGAATTCCACCTTTTCCAGAAACAAACATTTTTCC
TCTTAGCTCTGCTCTCCGGTGCCTTCACCCCCATCTATGTGGGCATCGTTTTCCTGGGCTTCACCCCCAA
CCACCACTGCCGGAGTCCTGGAGTGGCCGAGCTGAGCCAGCGATGTGGCTGGAGCCCAGCAGAGGAGCTG
AACTACACCGTGCCGGGCCTGGGGTCTGCGGGTGAGGTCTCCTTCCTCAGCCAGTGCATGAGGTATGAGG
TGGACTGGAACCAGAGCACCCTTGACTGTGTGGACCCACTGTCCAGCCTGGCTGCCAACAGGAGCCACTT
GCCACTGAGCCCCTGCGAGCATGGCTGGGTGTACGACACTCCCGGCTCCTCCATCGTCACTGAGTTTAAC
CTAGTGTGTGCTCACTCCTGGATGCTGGACCTGTTTCAGTCATTAGTGAACGTGGGGTTTTTCATCGGTG
CTGTGGGCATTGGTTACCTAGCAGACAGGTTTGGGCGGAAGTTCTGCCTCTTGGTCACCATCCTCATCAA
TGCTATCTCTGGGGTTCTCATGGCGATTTCACCCAACTATGCCTGGATGTTGGTGTTTCGATTTCTACAG
GGACTGGTCAGCAAAGCGGGCTGGTTAATTGGCTATATCCTGATTACAGAATTTGTTGGGCTGGGCTATC
GCAGAACAGTAGGGATTTGTTACCAAATCGCCTTTACTGTTGGGCTCCTGATCCTGGCTGGAGTGGCCTA
TGCCCTTCCCAACTGGAGGTGGCTGCAATTTGCCGTGACTCTGCCCAACTTCTGCTTCCTGCTCTATTTC
TGGTGCATACCGGAGTCTCCAAGATGGTTGATCTCCCAGAACAAAAATGCAAAAGCCATGAAAATCATTA
AGCATATTGCTAAGAAAAATGGAAAATCGGTGCCAGTCTCTCTTCAGAGCCTGACGGCAGATGAGGATAC
TGGCATGAAATTGAACCCTTCGTTCCTGGACTTGGTCAGAACCCCTCAGATAAGGAAACATACGTTGATC
TTGATGTACAATTGGTTCACGAGCTCTGTTCTCTACCAGGGCCTCATCATGCACATGGGCCTCGCAGGGG
ACAACATCTACTTGGATTTCTTCTACTCTGCCCTGGTGGAATTCCCAGCTGCCTTCATCATCATTCTCAC
CATAGACCGGATTGGTCGCCGCTATCCCTGGGCTGTGTCAAATATGGTGGCAGGAGCAGCCTGCCTAGCT
TCGGTTTTTATCCCTGATGATCTACAGTGGCTGAAAATTACCGTGGCGTGCTTGGGTAGAATGGGCATCA
CCATAGCCTACGAAATGGTCTGCCTGGTCAACGCTGAGCTGTACCCCACATACATCAGGAATCTTGCTGT
CCTTGTCTGCTCCTCTATGTGTGACATTGGTGGCATCGTCACACCTTTCCTGGTCTACCGTCTCACTGAC
ATCTGGCTGGAGTTCCCGCTGGTCGTATTTGCTGTGGTTGGCCTTGTTGCTGGGGGACTTGTGCTATTGC
TACCTGAGACCAAAGGGAAGGCTCTGCCTGAGACCATCGAGGATGCTGAGAAGATGCAGAGCCTAGGCAG
GCTGGTTCAGACTGTATGCCACTGA

Translation (544 aa):
MPTVDDILEHIGEFHLFQKQTFFLLALLSGAFTPIYVGIVFLGFTPNHHCRSPGVAELSQRCGWSPAEEL
NYTVPGLGSAGEVSFLSQCMRYEVDWNQSTLDCVDPLSSLAANRSHLPLSPCEHGWVYDTPGSSIVTEFN
LVCAHSWMLDLFQSLVNVGFFIGAVGIGYLADRFGRKFCLLVTILINAISGVLMAISPNYAWMLVFRFLQ
GLVSKAGWLIGYILITEFVGLGYRRTVGICYQIAFTVGLLILAGVAYALPNWRWLQFAVTLPNFCFLLYF
WCIPESPRWLISQNKNAKAMKIIKHIAKKNGKSVPVSLQSLTADEDTGMKLNPSFLDLVRTPQIRKHTLI
LMYNWFTSSVLYQGLIMHMGLAGDNIYLDFFYSALVEFPAAFIIILTIDRIGRRYPWAVSNMVAGAACLA
SVFIPDDLQWLKITVACLGRMGITIAYEMVCLVNAELYPTYIRNLAVLVCSSMCDIGGIVTPFLVYRLTD
IWLEFPLVVFAVVGLVAGGLVLLLPETKGKALPETIEDAEKMQSLGRLVQTVCH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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