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Report for CCDS18360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18360.1 Public Mus musculus 4 Lrrc19 23 108 98 CCDS HistoryNCBI Gene:100061Re-query CCDS DB by CCDS ID:18360.1Re-query CCDS DB by GeneID:100061See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18360.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053419.8 ENSMUSP00000056094.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053419.8Link to Ensembl Protein Viewer:ENSMUSP00000056094.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000053419Re-query CCDS DB by Protein ID:ENSMUSP00000056094
Original member Current member EBI ENSMUST00000107101.1 ENSMUSP00000102718.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107101.1Link to Ensembl Protein Viewer:ENSMUSP00000102718.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107101Re-query CCDS DB by Protein ID:ENSMUSP00000102718
Original member Current member NCBI NM_001356281.1 NP_001343210.1 Accepted alive Link to Nucleotide Sequence:NM_001356281.1Link to Protein Sequence:NP_001343210.1Re-query CCDS DB by Nucleotide ID:NM_001356281Re-query CCDS DB by Protein ID:NP_001343210Link to BLAST:NP_001343210.1
Original member Current member NCBI NM_175305.5 NP_780514.1 Accepted alive Link to Nucleotide Sequence:NM_175305.5Link to Protein Sequence:NP_780514.1Re-query CCDS DB by Nucleotide ID:NM_175305Re-query CCDS DB by Protein ID:NP_780514Link to BLAST:NP_780514.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343210.1 364 Q8BZT5 364 100% 0 0
NP_780514.1 364 Q8BZT5 364 100% 0 0

Chromosomal Locations for CCDS 18360.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 94638224 94638552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94639207 94639383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94640455 94640968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94643299 94643373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGAAAGTCACACGCTTCATGTTTTGGCTCTTCTCCATGCTACTACCATCTGTCAAAAGCCAAGCTTCTG
AAACAGAAGTCCCATGTAATTTCAGCAGAAGGAATTACACTTTGATTCCAGAGGGTATCAGTACCAATGT
TACCATTCTTGATCTCAGTTATAACCGAATTACTCTGAATGCTGCAGATAGCAGGGTGCTGCAGATGTAC
TCTTTACTCACTGAGCTCTACCTGATGGAGAATAACATCATTGCCTTATATAACAGCAGTTTCAGGAATC
TTCTCAACCTAGAAATTTTAAATATCTGTGGAAATTCAATCAGTGTAATTCAACAGGGTTCATTTGTTGG
CTTAAATGAACTAAAACAATTATTTCTTTGCCAAAACAAAATATTACAACTGAATCCCGATACATTTGTG
CCTCTAAATAACCTAAAAGTTCTGAATCTGCAAGGCAATTTGATACGCCTCTTCGATGCACCACAGCTAC
CTCATCTGGAGATACTAACTCTGGATGGAAATCCATGGAACTGTACCTGTGGTCTACTTGAGTTGCACAA
CTGGCTGAACACGTCTAATGTGACATTAGAAAACGAGAACATGACCATGTGTAGCTACCCAGATGAGCTA
AAGCACGACAGCATCAAGTCAGCGCCCTTCACAACTGAATGCCACTCTACATTTATTTCCACTATAACTG
AAGACTTTCAGTCCACTAGGAATTCATCTTTCAATAGCTCTTCACACAACTTAACATGGACCTCAGAGCA
TGAGCCTCTTGGGAAAAGCTGGGCTTTCCTGGTTGGTGTTGTTGCCACTGTACTGCTAACTTCACTGCTT
ATCTTCATTGCTATCAAGTGCCCAGTATGGTACAATATTCTGCTGAGTTACAACCACCATCGCCTGGAAG
AGCATGAGGCAGAAACCTATGAAAATGGTCTTACAAGAAACCCAAGTTCTCTTTCACAAATAACAGATAC
GAACTCTGAAGACACCACAGTGATATTTGAACAGTTGCATGCATTTGTGGTAGATGATGATGGGTTTATT
GAAGACAGATACATAGATATCAATGAGGTACATGAAGAAAAGTAA

Translation (364 aa):
MKVTRFMFWLFSMLLPSVKSQASETEVPCNFSRRNYTLIPEGISTNVTILDLSYNRITLNAADSRVLQMY
SLLTELYLMENNIIALYNSSFRNLLNLEILNICGNSISVIQQGSFVGLNELKQLFLCQNKILQLNPDTFV
PLNNLKVLNLQGNLIRLFDAPQLPHLEILTLDGNPWNCTCGLLELHNWLNTSNVTLENENMTMCSYPDEL
KHDSIKSAPFTTECHSTFISTITEDFQSTRNSSFNSSSHNLTWTSEHEPLGKSWAFLVGVVATVLLTSLL
IFIAIKCPVWYNILLSYNHHRLEEHEAETYENGLTRNPSSLSQITDTNSEDTTVIFEQLHAFVVDDDGFI
EDRYIDINEVHEEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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