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Report for CCDS15132.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15132.1 Public Mus musculus 1 Efhd1 23 108 98 CCDS HistoryNCBI Gene:98363Re-query CCDS DB by CCDS ID:15132.1Re-query CCDS DB by GeneID:98363See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15132.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027472.6 ENSMUSP00000027472.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027472.6Link to Ensembl Protein Viewer:ENSMUSP00000027472.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027472Re-query CCDS DB by Protein ID:ENSMUSP00000027472
Original member Current member EBI ENSMUST00000118687.7 ENSMUSP00000112980.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118687.7Link to Ensembl Protein Viewer:ENSMUSP00000112980.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118687Re-query CCDS DB by Protein ID:ENSMUSP00000112980
Original member Current member NCBI NM_028889.3 NP_083165.1 Accepted alive Link to Nucleotide Sequence:NM_028889.3Link to Protein Sequence:NP_083165.1Re-query CCDS DB by Nucleotide ID:NM_028889Re-query CCDS DB by Protein ID:NP_083165Link to BLAST:NP_083165.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083165.1 240 Q9D4J1 240 100% 0 0

Chromosomal Locations for CCDS 15132.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 87264450 87264754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87289468 87289615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87297629 87297763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87309661 87309795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGTCCAGCGAGGAGCTGGCCTGCAAGCTGCAGCGCCGGTTGAGACTTGAGGTGCGGGCAGAGACCGACC
AGGGCGACCCCCAGCCTGCACCCTGCGATGCCCCAGCCGGGCACCCGGAGCCTGAACCGCCTGCCCGGGC
GCCCACAGCCAGCGCGGACTCCGAACTGAACCTCAAGCTGAGCCGCAGGCTGGACATCCACCAGGGTACA
GCGCGGCCGGGCCGCTCTAAGGTCTTCAATCCCTACACCGAGTTCCCGGAGTTCAGCCGCCGCCTCCTGA
AGGATCTGGAGAAGATGTTCAAAACGTATGATGCTGGAAGGGACGGCTTTATTGACCTGATGGAGCTGAA
ACTCATGATGGAGAAACTGGGGGCCCCTCAGACCCACCTGGGCCTGAAGAGCATGATCAAGGAGGTGGAT
GAGGACTTCGACGGGAAGCTCAGCTTCCGGGAGTTCCTGCTCATTTTCCACAAGGCTGCTGCTGGTGAGC
TGCAGGAGGACAGTGGGTTGCTGGCACTGGCCAAGTTTTCCGAGATTGATGTCGCCCTGGAAGGTGTCAG
AGGTGCCAAGAACTTCTTCGAAGCCAAGGCCCAGGCCTTGTCATGTTCCAGTAAGTTCGAAGCTGAGTTA
AAAGCTGAGCAAGAAGAGCGGAAACGGGAGGAGGAGGCCCGGAGGCTCCGCCAGGCAGCCTTCCGGGAGC
TCAAGGCAGCTTTCAGCGCGTAG

Translation (240 aa):
MSSEELACKLQRRLRLEVRAETDQGDPQPAPCDAPAGHPEPEPPARAPTASADSELNLKLSRRLDIHQGT
ARPGRSKVFNPYTEFPEFSRRLLKDLEKMFKTYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKSMIKEVD
EDFDGKLSFREFLLIFHKAAAGELQEDSGLLALAKFSEIDVALEGVRGAKNFFEAKAQALSCSSKFEAEL
KAEQEERKREEEARRLRQAAFRELKAAFSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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