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Report for CCDS17480.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17480.1 Public Mus musculus 3 Ssr2 23 108 98 CCDS HistoryNCBI Gene:66256Re-query CCDS DB by CCDS ID:17480.1Re-query CCDS DB by GeneID:66256See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17480.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035785.8 ENSMUSP00000045456.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035785.8Link to Ensembl Protein Viewer:ENSMUSP00000045456.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035785Re-query CCDS DB by Protein ID:ENSMUSP00000045456
Original member Current member EBI ENSMUST00000195014.5 ENSMUSP00000141441.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000195014.5Link to Ensembl Protein Viewer:ENSMUSP00000141441.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000195014Re-query CCDS DB by Protein ID:ENSMUSP00000141441
Original member Current member NCBI NM_001356317.1 NP_001343246.1 Accepted alive Link to Nucleotide Sequence:NM_001356317.1Link to Protein Sequence:NP_001343246.1Re-query CCDS DB by Nucleotide ID:NM_001356317Re-query CCDS DB by Protein ID:NP_001343246Link to BLAST:NP_001343246.1
Original member Current member NCBI NM_025448.4 NP_079724.1 Accepted alive Link to Nucleotide Sequence:NM_025448.4Link to Protein Sequence:NP_079724.1Re-query CCDS DB by Nucleotide ID:NM_025448Re-query CCDS DB by Protein ID:NP_079724Link to BLAST:NP_079724.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343246.1 183 Q9CPW5 183 100% 0 0
NP_079724.1 183 Q9CPW5 183 100% 0 0

Chromosomal Locations for CCDS 17480.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88579880 88580034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88580974 88581072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88583777 88583885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88586865 88586942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88587881 88587991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGAGGCTGCTGGCGGTTGTGGTGTTGGCTCTGTTAGCCGTCAGTCAAGCAGAAGAAGGAGCCAGGCTTT
TGGCCTCCAAATCATTGCTCAACAGATACGCTGTGGAAGGGAGGGACCTGACCCTGCAGTATAACATCTA
CAACGTCGGCTCCAGCGCTGCATTAGATGTGGAATTATCTGACGATTCCTTCCCTCCAGAAGACTTCGGC
ATTGTCTCCGGTATGCTCAATGTCAAATGGGACCGGATTGCCCCCGCTAGCAATGTCTCCCACACAGTTG
TCCTGCGTCCTCTCAAAGCTGGCTACTTCAACTTCACTTCTGCCACGATTACTTACCTGGCCCAGGAGGA
TGGACCTGTTGTGATTGGCTCCACCAGCGCCCCTGGACAGGGAGGAATCCTCGCTCAGCGGGAGTTTGAC
AGGAGATTCTCCCCCCATTTTCTGGACTGGGCAGCCTTTGGGGTCATGACCTTGCCCTCCATAGGCATCC
CCCTGCTCCTGTGGTATTCCAGCAAGAGGAAGTACGATACTCCCAAACCCAAGAAGAACTGA

Translation (183 aa):
MRLLAVVVLALLAVSQAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFG
IVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDGPVVIGSTSAPGQGGILAQREFD
RRFSPHFLDWAAFGVMTLPSIGIPLLLWYSSKRKYDTPKPKKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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