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Report for CCDS87852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87852.1 Public Mus musculus 1 Nyap2 23 108 98 CCDS HistoryNCBI Gene:241134Re-query CCDS DB by CCDS ID:87852.1Re-query CCDS DB by GeneID:241134See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87852.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113494.8 ENSMUSP00000109122.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113494.8Link to Ensembl Protein Viewer:ENSMUSP00000109122.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113494Re-query CCDS DB by Protein ID:ENSMUSP00000109122
Original member Current member EBI ENSMUST00000137862.7 ENSMUSP00000120767.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000137862.7Link to Ensembl Protein Viewer:ENSMUSP00000120767.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000137862Re-query CCDS DB by Protein ID:ENSMUSP00000120767
Original member Current member NCBI NM_001356399.1 NP_001343328.1 Accepted alive Link to Nucleotide Sequence:NM_001356399.1Link to Protein Sequence:NP_001343328.1Re-query CCDS DB by Nucleotide ID:NM_001356399Re-query CCDS DB by Protein ID:NP_001343328Link to BLAST:NP_001343328.1
Original member Current member NCBI NM_001356400.1 NP_001343329.1 Accepted alive Link to Nucleotide Sequence:NM_001356400.1Link to Protein Sequence:NP_001343329.1Re-query CCDS DB by Nucleotide ID:NM_001356400Re-query CCDS DB by Protein ID:NP_001343329Link to BLAST:NP_001343329.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343328.1 650 Q8BM65-2 650 99.8462% 0 1
NP_001343329.1 650 Q8BM65-2 650 99.8462% 0 1

Chromosomal Locations for CCDS 87852.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 81087273 81087493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 81191751 81192052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 81240884 81241969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 81269044 81269253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 81297962 81298095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1953 nt):
ATGATACCATCCAAGATGATGAGTGCTAATCCTGAAGAAGACCCTCTGGACACCTTTTTCCAATATATTG
AGGATATGGGAATGAAAGCATACGATGGCCTGGTTATTCAAAATGCATCCGACATTGCTCGCGAGAATGA
TCGCCTGAGAAATGAGACAAACCTGGCTTACTTGAAGGAGAAGAACGAGAAACGTCGACGACAGGAAGAA
ACAATCAAACGCATAGGAGGAGAAGTGGGGCGAGGCCAGGACGCCAGTTACGCGGGCAAGCATTTCCGCA
TGGGGTTCATGACGATGCCTGCACCTCAGGACAGACTCCCACATCCCTGCTCCAGTGGCTTCACTGTGAG
ATCTCAGTCCCTGCACTCTGTAGGGGGCACTGAAGATGACAGCAGCTGTGGATCACGAAGACAACCACCT
CCCAAGCCCAAGCGAGACCCCAGCACTAAGCTTAGCACTTCGTCTGAGACAGTCAACAGCACTGCAGCCA
GTAAGAGTGGAAGATCTCTGGAGAGAGCAGAAGTGTCTGCCAAGCCAAGACCCCACAGTGATGAATATTC
AAAGAAAATTCCCCCTCCGAAACCAAAACGGAATCCTAATACTCAACTTAGCACGTCTTTCGATGAAACC
TACATCAAAAAGCATGTGCCAAGGAGAACCTCTCTCCCGCGAGATTCATCCCTGTCCCAGGTTTGCAGCC
CCGCGGCAGACCCCGAAGAAGAGGAGCCTGTGTACATCGAGATGGTGGGGAACATCCTCAGAGACTTCAG
GAAGGAAGAGGATGACCAGAGCGAGGCTGTGTATGAGGAGATGAAATATCCCATTTTCGACGACCTGGGC
CATGATTCCAAATGTGACTTTGATCATCACAGTTGCTCTTCGCAGTGTGCTACTCCCACGGTGCCTGACC
TGGACTTTGTCAAGTCTTCAGGACCATGTACTCCCAAGGGTCTGCTTTGTGACATACCCCCGCCCTTCCC
CAACTTGCTTTCTCATAGACCACCCCTGCTGGTGTTCCCACCGGCCCCAGTACACTGCTCTCCCAATTCC
GATGAGTCTCCACTGACCCCTCTGGAGGTCACAAAGCTTCCTGTGTTGGAAAACGTGTCTTACATGAAAC
AGCCACCTGGAGCATGTCCATCCTCACTGCCATCTCATGGCTCCAGCCATGCTAAAGACCAGACAGGAGC
CTTGGGTCCTGCTCCTGGAGCATCCATTCTCTCTTCTTCCCCTCCACCTCCATCCACTTTGTACAGAACC
CAGTCTCCCCATGGCTATCCAAAAAGTCACTCCACCTCCCCATCCCCTGTAAGCATGGGGAGGTCCCTGA
CGCCCTTGAGTCTCAAGAGGCCTCCCCCTTATGATGCTGTGCATTCTGGCAGCCTCTCAAGGAGTTCTTC
CTCAGTGCCTCACACGACCCCAAGACCCGTGTCACAGGATGGGGCCAAGATGGTCAATGCTGCGGTGAAT
ACATACAGCGCTGCGCAGAGTGGGTCCAGGTCCAGGACACCCACCAGTCCTTTGGAAGAGCTCACCAGCC
TCTTTACCTCAGGGCGGAGCCTGCTGCGGAAGTCATCCAGCGGCCGAAGGTCCAAAGAGCCAGCAGAGAA
ATCCACAGAGGAGCTGAAAGTTCGAAGCCACAGCACGGAGCCGTTACCAAAGTTGGACAGCAAAGAGAGA
GGTCATTATGGATCGTCTTCCTCTAGAGAGCCAGTGAAAGCTCAAGAATGGGATGGAACCCCGGGTCCAC
CTGTGGTCACCAGCAGAATGGGCAGATGCTCTGTGAGCCCCACACTGTTGGCAGGAAACCACAGCTCAGA
ACCTAAAGTAAGCTGCAAGCTGGGGCGGTCTGCATCTACATCAGGAGTCCCTCCTCCTTCAGTCACTCCT
CTCAGGCAAGCCAGTGATCTGCAACAGAGCCAGGTACCATCATCGTTAGCCAATCGTGATTGA

Translation (650 aa):
MIPSKMMSANPEEDPLDTFFQYIEDMGMKAYDGLVIQNASDIARENDRLRNETNLAYLKEKNEKRRRQEE
TIKRIGGEVGRGQDASYAGKHFRMGFMTMPAPQDRLPHPCSSGFTVRSQSLHSVGGTEDDSSCGSRRQPP
PKPKRDPSTKLSTSSETVNSTAASKSGRSLERAEVSAKPRPHSDEYSKKIPPPKPKRNPNTQLSTSFDET
YIKKHVPRRTSLPRDSSLSQVCSPAADPEEEEPVYIEMVGNILRDFRKEEDDQSEAVYEEMKYPIFDDLG
HDSKCDFDHHSCSSQCATPTVPDLDFVKSSGPCTPKGLLCDIPPPFPNLLSHRPPLLVFPPAPVHCSPNS
DESPLTPLEVTKLPVLENVSYMKQPPGACPSSLPSHGSSHAKDQTGALGPAPGASILSSSPPPPSTLYRT
QSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSSSVPHTTPRPVSQDGAKMVNAAVN
TYSAAQSGSRSRTPTSPLEELTSLFTSGRSLLRKSSSGRRSKEPAEKSTEELKVRSHSTEPLPKLDSKER
GHYGSSSSREPVKAQEWDGTPGPPVVTSRMGRCSVSPTLLAGNHSSEPKVSCKLGRSASTSGVPPPSVTP
LRQASDLQQSQVPSSLANRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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