NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS87853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87853.1 Public Mus musculus 1 Nyap2 23 108 98 CCDS HistoryNCBI Gene:241134Re-query CCDS DB by CCDS ID:87853.1Re-query CCDS DB by GeneID:241134See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87853.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000123720.7 ENSMUSP00000117661.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000123720.7Link to Ensembl Protein Viewer:ENSMUSP00000117661.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000123720Re-query CCDS DB by Protein ID:ENSMUSP00000117661
Original member Current member NCBI NM_001356398.1 NP_001343327.1 Accepted alive Link to Nucleotide Sequence:NM_001356398.1Link to Protein Sequence:NP_001343327.1Re-query CCDS DB by Nucleotide ID:NM_001356398Re-query CCDS DB by Protein ID:NP_001343327Link to BLAST:NP_001343327.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343327.1 682 Q8BM65-1 682 99.8534% 0 1

Chromosomal Locations for CCDS 87853.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 81087273 81087493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 81191751 81192148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 81240884 81241969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 81269044 81269253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 81297962 81298095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2049 nt):
ATGATACCATCCAAGATGATGAGTGCTAATCCTGAAGAAGACCCTCTGGACACCTTTTTCCAATATATTG
AGGATATGGGAATGAAAGCATACGATGGCCTGGTTATTCAAAATGCATCCGACATTGCTCGCGAGAATGA
TCGCCTGAGAAATGAGACAAACCTGGCTTACTTGAAGGAGAAGAACGAGAAACGTCGACGACAGGAAGAA
ACAATCAAACGCATAGGAGGAGAAGTGGGGCGAGGCCAGGACGCCAGTTACGCGGGCAAGCATTTCCGCA
TGGGGTTCATGACGATGCCTGCACCTCAGGACAGACTCCCACATCCCTGCTCCAGTGGCTTCACTGTGAG
ATCTCAGTCCCTGCACTCTGTAGGGGGCACTGAAGATGACAGCAGCTGTGGATCACGAAGACAACCACCT
CCCAAGCCCAAGCGAGACCCCAGCACTAAGCTTAGCACTTCGTCTGAGACAGTCAACAGCACTGCAGCCA
GTAAGAGTGGAAGATCTCTGGAGAGAGCAGAAGGTAAATTCACCGTTCCTGCTTCCCACTCACCTCCAAG
GGCTTCAACTTCAGGACACCTGTTTCCTTCCCCTGGGTCCCAGGAACGAAACATCAAGGTGTCTGCCAAG
CCAAGACCCCACAGTGATGAATATTCAAAGAAAATTCCCCCTCCGAAACCAAAACGGAATCCTAATACTC
AACTTAGCACGTCTTTCGATGAAACCTACATCAAAAAGCATGTGCCAAGGAGAACCTCTCTCCCGCGAGA
TTCATCCCTGTCCCAGGTTTGCAGCCCCGCGGCAGACCCCGAAGAAGAGGAGCCTGTGTACATCGAGATG
GTGGGGAACATCCTCAGAGACTTCAGGAAGGAAGAGGATGACCAGAGCGAGGCTGTGTATGAGGAGATGA
AATATCCCATTTTCGACGACCTGGGCCATGATTCCAAATGTGACTTTGATCATCACAGTTGCTCTTCGCA
GTGTGCTACTCCCACGGTGCCTGACCTGGACTTTGTCAAGTCTTCAGGACCATGTACTCCCAAGGGTCTG
CTTTGTGACATACCCCCGCCCTTCCCCAACTTGCTTTCTCATAGACCACCCCTGCTGGTGTTCCCACCGG
CCCCAGTACACTGCTCTCCCAATTCCGATGAGTCTCCACTGACCCCTCTGGAGGTCACAAAGCTTCCTGT
GTTGGAAAACGTGTCTTACATGAAACAGCCACCTGGAGCATGTCCATCCTCACTGCCATCTCATGGCTCC
AGCCATGCTAAAGACCAGACAGGAGCCTTGGGTCCTGCTCCTGGAGCATCCATTCTCTCTTCTTCCCCTC
CACCTCCATCCACTTTGTACAGAACCCAGTCTCCCCATGGCTATCCAAAAAGTCACTCCACCTCCCCATC
CCCTGTAAGCATGGGGAGGTCCCTGACGCCCTTGAGTCTCAAGAGGCCTCCCCCTTATGATGCTGTGCAT
TCTGGCAGCCTCTCAAGGAGTTCTTCCTCAGTGCCTCACACGACCCCAAGACCCGTGTCACAGGATGGGG
CCAAGATGGTCAATGCTGCGGTGAATACATACAGCGCTGCGCAGAGTGGGTCCAGGTCCAGGACACCCAC
CAGTCCTTTGGAAGAGCTCACCAGCCTCTTTACCTCAGGGCGGAGCCTGCTGCGGAAGTCATCCAGCGGC
CGAAGGTCCAAAGAGCCAGCAGAGAAATCCACAGAGGAGCTGAAAGTTCGAAGCCACAGCACGGAGCCGT
TACCAAAGTTGGACAGCAAAGAGAGAGGTCATTATGGATCGTCTTCCTCTAGAGAGCCAGTGAAAGCTCA
AGAATGGGATGGAACCCCGGGTCCACCTGTGGTCACCAGCAGAATGGGCAGATGCTCTGTGAGCCCCACA
CTGTTGGCAGGAAACCACAGCTCAGAACCTAAAGTAAGCTGCAAGCTGGGGCGGTCTGCATCTACATCAG
GAGTCCCTCCTCCTTCAGTCACTCCTCTCAGGCAAGCCAGTGATCTGCAACAGAGCCAGGTACCATCATC
GTTAGCCAATCGTGATTGA

Translation (682 aa):
MIPSKMMSANPEEDPLDTFFQYIEDMGMKAYDGLVIQNASDIARENDRLRNETNLAYLKEKNEKRRRQEE
TIKRIGGEVGRGQDASYAGKHFRMGFMTMPAPQDRLPHPCSSGFTVRSQSLHSVGGTEDDSSCGSRRQPP
PKPKRDPSTKLSTSSETVNSTAASKSGRSLERAEGKFTVPASHSPPRASTSGHLFPSPGSQERNIKVSAK
PRPHSDEYSKKIPPPKPKRNPNTQLSTSFDETYIKKHVPRRTSLPRDSSLSQVCSPAADPEEEEPVYIEM
VGNILRDFRKEEDDQSEAVYEEMKYPIFDDLGHDSKCDFDHHSCSSQCATPTVPDLDFVKSSGPCTPKGL
LCDIPPPFPNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEVTKLPVLENVSYMKQPPGACPSSLPSHGS
SHAKDQTGALGPAPGASILSSSPPPPSTLYRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVH
SGSLSRSSSSVPHTTPRPVSQDGAKMVNAAVNTYSAAQSGSRSRTPTSPLEELTSLFTSGRSLLRKSSSG
RRSKEPAEKSTEELKVRSHSTEPLPKLDSKERGHYGSSSSREPVKAQEWDGTPGPPVVTSRMGRCSVSPT
LLAGNHSSEPKVSCKLGRSASTSGVPPPSVTPLRQASDLQQSQVPSSLANRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH