NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50114.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50114.1 Public Mus musculus 17 Cd2ap 23 108 98 CCDS HistoryNCBI Gene:12488Re-query CCDS DB by CCDS ID:50114.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50114.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024709.8 ENSMUSP00000024709.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024709.8Link to Ensembl Protein Viewer:ENSMUSP00000024709.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024709Re-query CCDS DB by Protein ID:ENSMUSP00000024709
Original member NCBI NM_009847.3 NP_033977.3 Updated not alive Link to Nucleotide Sequence:NM_009847.3Link to Protein Sequence:NP_033977.3Re-query CCDS DB by Nucleotide ID:NM_009847Re-query CCDS DB by Protein ID:NP_033977
Current member NCBI NM_009847.4 NP_033977.3 Accepted alive Link to Nucleotide Sequence:NM_009847.4Link to Protein Sequence:NP_033977.3Re-query CCDS DB by Nucleotide ID:NM_009847Re-query CCDS DB by Protein ID:NP_033977Link to BLAST:NP_033977.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033977.3 637 Q9JLQ0 637 100% 0 0

Chromosomal Locations for CCDS 50114.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 42796328 42796369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42798595 42798658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42805160 42805335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42807914 42808015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42808731 42808843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42815945 42816087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42816427 42816592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42820595 42820657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42822349 42822385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42824474 42824578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42825837 42825931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42826281 42826359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42829918 42830105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42834165 42834285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42838702 42838802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42845326 42845479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42852368 42852528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42876313 42876316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1914 nt):
ATGGTTGACTATATTGTGGAATATGACTATGATGCTGTACATGATGATGAGTTAACTATCCGAGTTGGGG
AAATCATCAGAAATGTGAAAAAACTACAGGAAGAAGGATGGCTAGAAGGAGAACTAAATGGGAGACGAGG
GATGTTCCCTGACAATTTTGTTAAGGAAATTAAGCGAGAGACAGAACCCAAGGATGACAATTTGCCCATC
AAACGGGAAAGGCAAGGAAATGTAGCAAGTCTTGTACAGCGAATCAGCACTTATGGACTTCCAGCTGGAG
GAATTCAGCCACATCCACAAACCAAAGCTATTAAGAAGAAGACAAAAAAGCGTCAGTGTAAAGTTCTTTT
TGACTACTCTCCACAAAATGAGGACGAACTGGAATTGATCGTGGGGGATGTCATTGACGTCATTGAAGAG
GTAGAAGAAGGCTGGTGGAGTGGAACCCTGAACAATAAGTTGGGACTGTTTCCCTCAAACTTTGTGAAAG
AATTAGAGTCCACAGAGGATGGTGAAACTCACAACGCTCAGGAGGAATCAGAAGTTCCTTTGACTGGCCC
TACCTCACCGTTGCCATCTCCGGGGAATGGGAGTGAACCTGCTCCCGGATCAGTTGCACAGCCAAAGAAA
ATCCGAGGAATTGGATTTGGAGACATCTTTAAAGAAGGCTCTGTGAAACTTCGGACAAGAACTTCCAGTA
GTGAAACAGAGGAGAAAAAAACAGAAAAGCCTTTAATCCTACAGCCTCTGGGATCTAGAACTCAGAATGT
GGAGGTAACAAAACCAGACGTTGATGGCAAGATTAAAGCTAAGGAATATTGTAGAACATTATTTCCCTAT
ACAGGAACCAATGAAGATGAACTTACATTTAGAGAAGGGGAGATTATCCATTTGATAAGTAAGGAGACTG
GAGAAGCAGGCTGGTGGAAGGGTGAACTGAACGGTAAAGAAGGAGTGTTTCCAGATAACTTTGCTGTTCA
GATAAGTGAACTAGATAAAGACTTTCCAAAACCAAAGAAACCACCTCCTCCTGCAAAAGGTCCAGCTCCA
AAGCCTGACCTGTCAGCTGCAGAGAAGAAAGCTTTCCCTCTAAAGGCTGAAGAAAAAGATGAAAAATCAC
TGTTAGAACAGAAACCTTCTAAACCAGCTGCTCCTCAAGTCCCGCCCAAAAAGCCCACTGCACCCACCAA
AGCCAGTAACTTACTGAGGTCGCCTGGAGCAGTGTACCCAAAGCGGCCAGAAAAGCCAGTCCCTCCGCCA
CCTCCAGCAGCCAAAATTAATGGAGAAGTTTCTATAATTTCTTCAAAGATTGATACTGAGCCAGTATCAA
AACCAAAGCTAGATCCTGAACAATTGCCAGTTAGACCAAAATCAGTAGACCTTGATGCCTTTGTAGCCAG
GAACTCAAAAGAAACAGATGATGTAAATTTTGATGACATAGCTTCCTCAGAGAACTTGTTACATCTCACT
GCTAATAGACCCAAGATGCCTGGAAGACGATTGCCTGGCCGCTTCAACGGTGGACATTCTCCAACCCAAA
GCCCAGAAAAAACCTTGAAGCTACCAAAAGAAGATGATAGTGGCAACCTAAAGCCTTTGGAGTTTAAAAA
GGATGCAAGCTACTCTTCAAAGTCATCTCTTTCAACACCTTCAAGTGCTTCTAAAGTAAATACAGCTGCT
TTCCTAACTCCGTTAGAACTCAAAGCTAAAGCAGAAGCAGATGATGGGAAAAGAAATTCCGTGGACGAAC
TTAGAGCCCAGATTATTGAATTGTTGTGTATTGTAGATGCACTGAAAAAGGATCATGGGAAAGAACTGGA
AAAGCTACGCAAAGAATTAGAAGAAGAGAAGGCCATGCGAAGTAATCTAGAGGTGGAAATAGCAAAGCTG
AAGAAAGCTGTTCTGTTGTCTTGA

Translation (637 aa):
MVDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRETEPKDDNLPI
KRERQGNVASLVQRISTYGLPAGGIQPHPQTKAIKKKTKKRQCKVLFDYSPQNEDELELIVGDVIDVIEE
VEEGWWSGTLNNKLGLFPSNFVKELESTEDGETHNAQEESEVPLTGPTSPLPSPGNGSEPAPGSVAQPKK
IRGIGFGDIFKEGSVKLRTRTSSSETEEKKTEKPLILQPLGSRTQNVEVTKPDVDGKIKAKEYCRTLFPY
TGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQISELDKDFPKPKKPPPPAKGPAP
KPDLSAAEKKAFPLKAEEKDEKSLLEQKPSKPAAPQVPPKKPTAPTKASNLLRSPGAVYPKRPEKPVPPP
PPAAKINGEVSIISSKIDTEPVSKPKLDPEQLPVRPKSVDLDAFVARNSKETDDVNFDDIASSENLLHLT
ANRPKMPGRRLPGRFNGGHSPTQSPEKTLKLPKEDDSGNLKPLEFKKDASYSSKSSLSTPSSASKVNTAA
FLTPLELKAKAEADDGKRNSVDELRAQIIELLCIVDALKKDHGKELEKLRKELEEEKAMRSNLEVEIAKL
KKAVLLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH