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Report for CCDS57301.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57301.1 Public Mus musculus 4 Serinc2 23 108 98 CCDS HistoryNCBI Gene:230779Re-query CCDS DB by CCDS ID:57301.1Re-query CCDS DB by GeneID:230779See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57301.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122374.7 ENSMUSP00000112535.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122374.7Link to Ensembl Protein Viewer:ENSMUSP00000112535.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122374Re-query CCDS DB by Protein ID:ENSMUSP00000112535
Original member Current member NCBI NM_001253386.1 NP_001240315.1 Accepted alive Link to Nucleotide Sequence:NM_001253386.1Link to Protein Sequence:NP_001240315.1Re-query CCDS DB by Nucleotide ID:NM_001253386Re-query CCDS DB by Protein ID:NP_001240315Link to BLAST:NP_001240315.1
Original member Current member NCBI NM_001356465.1 NP_001343394.1 Accepted alive Link to Nucleotide Sequence:NM_001356465.1Link to Protein Sequence:NP_001343394.1Re-query CCDS DB by Nucleotide ID:NM_001356465Re-query CCDS DB by Protein ID:NP_001343394Link to BLAST:NP_001343394.1

Chromosomal Locations for CCDS 57301.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 130253930 130254065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130255356 130255565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130258228 130258363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130258701 130258791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130260643 130260812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130263028 130263165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130263582 130263661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130264261 130264451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130265069 130265104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGCTGAGCCCGGGAGTGGAGAGTCAGCTTTACAAGCTGCCCTGGGTGTGTGAGGACAGGACCCAGCAAC
CCCTGGTCCTGCAGGGGCCCCTGGACTGCGGCTCCCTGCTGGGTTTCCGCGCTGTCTACCGTATGTGCTT
TGCCACAGCAGCCTTTTTCTTCTTCTTCATGCTGTTAATGATCTGTGTCCGCAGTAGCCGGGATCCGCGA
GCAGCCATCCAGAACGGGTTTTGGTTTTTTAAATTCCTGATCCTTGTGGGTATCACTGTGGGCGCCTTCT
ACATCCCTGATGGCTCCTTTCCCAAGATCTGGTTCTACTTTGGCGTCGTGGGCTCCTTCCTCTTCATCCT
CATCCAGCTGATCCTGTTTGTTGACTTTGCCCACTCCTGGAATCAGCGGTGGCTGTGTAAGGCCGAGGAG
TGTGACTCTCCAGCCTGGTACGCAGGCCTTTTCTTCTTCACCTTCCTCTTCTACCTGTTGTCCATCGCTG
CTGTGGCACTGATGTTCGTCTACTACACGGAGTCTGGTGCCTGCCATGAGGGCAAGGTCTTCATCAGCCT
CAATCTCACCTTCTGTGTCTGCGTCTCCATCATTGCTGTCCTGCCCAAGGTCCAGGATGCTCAGCCCAAC
TCGGGTCTGCTGCAAGCCTCCGTCATAACCTTGTATACAATGTTTGTCACCTGGTCTGCCCTATCCAACG
TCCCTGACCAAAAATGCAACCCTCACCTGCCCACTAAAAATGGAACAGGCCAGGTGGACCTGGAGGACTA
CAGCACGGTGTGGTGGGATGCCCCGAGCATTGTGGGCCTCGTCATCTTCATCCTGTGCACCTTCTTCATT
AGCCTGCGATCCTCTGACCACCGTCAGGTGAACAGCCTGATGCAGACAGAGGAGTGTCCGGCAGAGATGG
TGCAGCAGCAGCAGGTGGCCGTCAGTGATGGCAGAGCCTATGACAATGAGCAGGATGGTGTCACCTACAG
CTACTCCTTCTTCCACTTCTGCCTGGTGCTGGCCTCCCTGCATGTCATGATGACGCTTACCAACTGGTAC
AGCCCTGGAGAGACCCGGAAGATGATCAGCACTTGGACCTCAGTGTGGGTGAAGATCTGTGCCAGCTGGG
CGGGGCTGTTCCTCTACCTGTGGACCCTAGTGGCACCCCTGCTCCTGCCCAACAGAGACTTCAGCTGA

Translation (395 aa):
MLSPGVESQLYKLPWVCEDRTQQPLVLQGPLDCGSLLGFRAVYRMCFATAAFFFFFMLLMICVRSSRDPR
AAIQNGFWFFKFLILVGITVGAFYIPDGSFPKIWFYFGVVGSFLFILIQLILFVDFAHSWNQRWLCKAEE
CDSPAWYAGLFFFTFLFYLLSIAAVALMFVYYTESGACHEGKVFISLNLTFCVCVSIIAVLPKVQDAQPN
SGLLQASVITLYTMFVTWSALSNVPDQKCNPHLPTKNGTGQVDLEDYSTVWWDAPSIVGLVIFILCTFFI
SLRSSDHRQVNSLMQTEECPAEMVQQQQVAVSDGRAYDNEQDGVTYSYSFFHFCLVLASLHVMMTLTNWY
SPGETRKMISTWTSVWVKICASWAGLFLYLWTLVAPLLLPNRDFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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