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Report for CCDS89560.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89560.1 Public Mus musculus 2 Slc24a3 23 108 98 CCDS HistoryNCBI Gene:94249Re-query CCDS DB by CCDS ID:89560.1Re-query CCDS DB by GeneID:94249See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89560.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110007.7 ENSMUSP00000105634.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110007.7Link to Ensembl Protein Viewer:ENSMUSP00000105634.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110007Re-query CCDS DB by Protein ID:ENSMUSP00000105634
Original member Current member NCBI NM_001356497.1 NP_001343426.1 Accepted alive Link to Nucleotide Sequence:NM_001356497.1Link to Protein Sequence:NP_001343426.1Re-query CCDS DB by Nucleotide ID:NM_001356497Re-query CCDS DB by Protein ID:NP_001343426Link to BLAST:NP_001343426.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343426.1 645 Q99PD7 645 100% 0 0

Chromosomal Locations for CCDS 89560.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 145168059 145168197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145244961 145245089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145448506 145448582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145512754 145512828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145518402 145518486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145518844 145518947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145580972 145581046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145591158 145591183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145598341 145598394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145602472 145602605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145604422 145604582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145606597 145606867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145613523 145613689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145616599 145616713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145617834 145617946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145635373 145635438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145640215 145640361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1938 nt):
ATGCCGCCGCCGGGCGACCAGGACTGCGCGCGCCGCCGCAGCCGCCGCCGGCGGAGGGACCTTCTGCTGA
GCCAGCTTTGCTTCCTGGCCTCGGTGGCGCTGCTGCTCTGGTCGCTGTCGAGCCTGCGAGAGCAGAAGGA
ACTTGACCTCATGGATCTCATTGGGGAAGATAGAAAATGGATGGTGGGGAGGAAGCTGATGCAGGTGAAT
GATACACTGACTTCTGAAGATGCAGGGCTCCAGAGCAGCAAGAACTGCACAGAACCAGCCCTGCATGAAT
TCCCCAGGGACATCTTCTCCAATGAAGACCGACGACAGGGAGCAGTGGTCCTCCACGTGCTCTGTGCCAT
GTACATGTTCTATGCGCTGGCCATTGTGTGCGATGACTTCTTCGTCCCATCCTTGGAAAAGATCTGTGAG
CGCCTCCACCTCAGTGAAGATGTGGCAGGAGCCACATTCATGGCAGCAGGCAGCTCGGCCCCAGAGCTGT
TCACGTCGGTCATAGGAGTCTTCATCACAAAGGGTGATGTGGGAGTTGGCACCATCGTGGGCTCTGCCGT
GTTCAACATCCTGTGCATCATTGGCGTCTGCGGGCTCTTTGCAGGGCAGGTGGTGGCTCTTTCCTCCTGG
TGCCTGCTGAGGGACTCCATCTACTACACGCTGTCTGTGGTCGCACTCATTGTGTTCATTTACGATGAAA
AAGTTTCTTGGTGGGAATCTCTAGTCCTTGTGCTGATGTACCTCATCTATATCGTCATCATGAAATACAA
TGCGTGCATACACCAGTGCTTCGAAAGGAGGACGAAAGGTGCCGGGAACATGGTCAACGGATTGGCCAAC
AATGCAGAAATCGACGACAGCAGCAACTGCGATGCCACTGTGGTGCTACTCAAGAAAGCCAATTTCCACC
GCAAAGCGTCCGTGATCATGGTGGATGAGCTGCTGTCTGCCTACCCACACCAGCTTTCTTTCTCTGAGGC
TGGCCTTCGAATTATGATCACAAGCCACTTTCCTCCCAAGACCCGCCTCTCCATGGCCAGTCGCATGTTA
ATCAATGAGAGACAAAGACTGATAAACAGCAGGGCCTATACCAATGGGGAATCTGAAGTGGCCATCAAAA
TCCCAATTAAGCACACAGTGGAGAACGGAACAGGGCCCAGCAGTGCCCCAGACAGGGGTGTGAACGGAAC
CCGGAGGGACGACATAGTTGCTGAGACTGACAATGAGACAGAGAACGAGAATGAAGACAATGAGAATAAC
GAGAATGATGAAGAGGAGGAGGAGGATGAAGATGATGATGAAGGCCCCTACACGCCGTTCGACCCCCCCT
CTGGCAAACTGGAAACTGTGAAATGGGCTTTCACCTGGCCACTGAGCTTTGTCTTGTACTTCACTGTCCC
CAACTGTAACAAACCCCACTGGGAGAAGTGGTTTATGGTGACATTCGCTTCCTCTACGCTATGGATCGCA
GCCTTCTCCTACATGATGGTGTGGATGGTTACCATCATCGGCTACACACTAGGGATCCCTGATGTCATCA
TGGGGATCACCTTCCTGGCTGCCGGAACCAGCGTGCCAGACTGCATGGCCAGCCTCATTGTAGCCAGACA
AGGGATGGGGGATATGGCTGTGTCCAATTCCATTGGGAGCAACGTCTTTGACATCTTGATTGGGCTCGGT
CTTCCCTGGGCTCTGCAGACTCTGGCTGTAGACTACGGATCCTATATTCGGCTGAATAGCAGAGGGCTCA
TCTACTCCGTGGGCTTGCTCCTGGCCTCTGTCTTTGTCACGGTCTTTGGTGTTCACTTGAACAAGTGGCA
GCTGGACAAGAAGCTGGGCTGTGGATGCCTCTTCCTGTACGGCGTGTTCCTCTGTTTCTCCATCATGACG
GAGTTCAACGTGTTCACCTTTGTGAACTTGCCCATGTGTGGGGACTAA

Translation (645 aa):
MPPPGDQDCARRRSRRRRRDLLLSQLCFLASVALLLWSLSSLREQKELDLMDLIGEDRKWMVGRKLMQVN
DTLTSEDAGLQSSKNCTEPALHEFPRDIFSNEDRRQGAVVLHVLCAMYMFYALAIVCDDFFVPSLEKICE
RLHLSEDVAGATFMAAGSSAPELFTSVIGVFITKGDVGVGTIVGSAVFNILCIIGVCGLFAGQVVALSSW
CLLRDSIYYTLSVVALIVFIYDEKVSWWESLVLVLMYLIYIVIMKYNACIHQCFERRTKGAGNMVNGLAN
NAEIDDSSNCDATVVLLKKANFHRKASVIMVDELLSAYPHQLSFSEAGLRIMITSHFPPKTRLSMASRML
INERQRLINSRAYTNGESEVAIKIPIKHTVENGTGPSSAPDRGVNGTRRDDIVAETDNETENENEDNENN
ENDEEEEEDEDDDEGPYTPFDPPSGKLETVKWAFTWPLSFVLYFTVPNCNKPHWEKWFMVTFASSTLWIA
AFSYMMVWMVTIIGYTLGIPDVIMGITFLAAGTSVPDCMASLIVARQGMGDMAVSNSIGSNVFDILIGLG
LPWALQTLAVDYGSYIRLNSRGLIYSVGLLLASVFVTVFGVHLNKWQLDKKLGCGCLFLYGVFLCFSIMT
EFNVFTFVNLPMCGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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