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Report for CCDS11866.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11866.1 Public Homo sapiens 18 FAM210A 24 110 108 CCDS HistoryNCBI Gene:125228Re-query CCDS DB by CCDS ID:11866.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11866.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322247.7 ENSP00000323635.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000322247.7Link to Ensembl Protein Viewer:ENSP00000323635.3Re-query CCDS DB by Nucleotide ID:ENST00000322247Re-query CCDS DB by Protein ID:ENSP00000323635
Original member Current member EBI ENST00000402563.5 ENSP00000386115.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402563.5Link to Ensembl Protein Viewer:ENSP00000386115.1Re-query CCDS DB by Nucleotide ID:ENST00000402563Re-query CCDS DB by Protein ID:ENSP00000386115
Original member Current member EBI ENST00000651643.1 ENSP00000498370.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000651643.1Link to Ensembl Protein Viewer:ENSP00000498370.1Re-query CCDS DB by Nucleotide ID:ENST00000651643Re-query CCDS DB by Protein ID:ENSP00000498370
Original member Current member NCBI NM_001098801.2 NP_001092271.1 Accepted alive Link to Nucleotide Sequence:NM_001098801.2Link to Protein Sequence:NP_001092271.1Re-query CCDS DB by Nucleotide ID:NM_001098801Re-query CCDS DB by Protein ID:NP_001092271Link to BLAST:NP_001092271.1
Original member Current member NCBI NM_152352.4 NP_689565.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152352.4Link to Protein Sequence:NP_689565.2Re-query CCDS DB by Nucleotide ID:NM_152352Re-query CCDS DB by Protein ID:NP_689565Link to BLAST:NP_689565.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092271.1 272 Q96ND0 272 100% 0 0
NP_689565.2 272 Q96ND0 272 100% 0 0

Chromosomal Locations for CCDS 11866.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 13666480 13666713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13671862 13671973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13681605 13682077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (819 nt):
ATGCAATGGAATGTACCACGGACTGTATCTCGACTGGCACGCAGGACATGCTTGGAACCACATAATGCTG
GTCTCTTTGGACACTGTCAAAATGTAAAGGGACCTTTACTTTTATACAATGCTGAATCCAAAGTGGTTTT
GGTACAAGGCCCTCAAAAACAATGGTTGCATTTATCTGCTGCCCAGTGTGTTGCAAAGGAAAGGAGGCCA
TTGGATGCTCATCCACCCCAACCAGGAGTCCTTCGCCATAAGCAAGGGAAGCAACATGTTTCATTCAGGA
GGGTTTTTTCATCCAGTGCCACAGCTCAGGGAACTCCGGAAAAAAAGGAAGAGCCTGATCCTTTGCAAGA
CAAATCTATTAGTCTTTATCAACGATTCAAGAAGACATTTAGACAGTATGGAAAAGTTCTGATTCCAGTG
CATCTAATAACTTCTGGTGTTTGGTTTGGAACATTTTATTATGCAGCCTTGAAAGGAGTGAATGTCGTTC
CTTTTCTAGAACTCATTGGGTTACCTGACAGTGTGGTAAGCATCCTGAAAAACTCCCAGAGTGGAAATGC
CCTCACAGCATATGCCTTGTTTAAGATTGCAACACCTGCTCGGTATACCGTGACTTTGGGAGGAACATCT
GTCACTGTGAAGTATCTGCGCAGTCATGGCTACATGTCCACGCCGCCACCCGTCAAGGAGTATCTGCAGG
ACAGGATGGAAGAGACAAAGGAGCTTATCACAGAGAAAATGGAAGAAACAAAAGATAGACTCACTGAAAA
GTTACAAGAAACCAAAGAAAAAGTTTCCTTTAAGAAAAAAGTGGAATAA

Translation (272 aa):
MQWNVPRTVSRLARRTCLEPHNAGLFGHCQNVKGPLLLYNAESKVVLVQGPQKQWLHLSAAQCVAKERRP
LDAHPPQPGVLRHKQGKQHVSFRRVFSSSATAQGTPEKKEEPDPLQDKSISLYQRFKKTFRQYGKVLIPV
HLITSGVWFGTFYYAALKGVNVVPFLELIGLPDSVVSILKNSQSGNALTAYALFKIATPARYTVTLGGTS
VTVKYLRSHGYMSTPPPVKEYLQDRMEETKELITEKMEETKDRLTEKLQETKEKVSFKKKVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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