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Report for CCDS44629.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44629.1 Public Homo sapiens 11 NXF1 24 110 108 CCDS HistoryNCBI Gene:10482Re-query CCDS DB by CCDS ID:44629.1Re-query CCDS DB by GeneID:10482See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 44629.1
This CCDS ID represents the protein described in PMID: 16971948. This transcript is supported by AB209915.1. It should be noted this transcript is predicted to undergo nonsense-mediated mRNA decay (NMD). However, the protein is represented because it was detected endogenously in PMID: 16971948. It is likely that the majority of transcripts representing this variant will undergo NMD, while some low level of NMD escape may allow for the expression of this protein.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 44629.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000531709.6 ENSP00000453885.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000531709.6Link to Ensembl Protein Viewer:ENSP00000453885.1Re-query CCDS DB by Nucleotide ID:ENST00000531709Re-query CCDS DB by Protein ID:ENSP00000453885
Original member Current member NCBI NM_001081491.2 NP_001074960.1 Accepted alive Link to Nucleotide Sequence:NM_001081491.2Link to Protein Sequence:NP_001074960.1Re-query CCDS DB by Nucleotide ID:NM_001081491Re-query CCDS DB by Protein ID:NP_001074960Link to BLAST:NP_001074960.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074960.1 356 Q9UBU9-2 356 100% 0 0

Chromosomal Locations for CCDS 44629.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 62800322 62800486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62801094 62801201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62801329 62801417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62801562 62801631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62801739 62801819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62801942 62802046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62802177 62802260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62803419 62803572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62803792 62803978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62805329 62805356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGGCGGACGAGGGGAAGTCGTACAGCGAACACGATGATGAACGCGTTAATTTCCCTCAAAGAAAGAAGA
AAGGCCGGGGTCCCTTCCGGTGGAAATATGGTGAAGGAAACCGTAGGTCTGGAAGAGGCGGTTCTGGTAT
TCGGTCTTCCCGCCTTGAGGAAGATGATGGAGATGTGGCAATGAGTGATGCCCAGGATGGTCCCCGAGTA
CGATACAACCCCTATACCACCCGACCTAACCGTCGGGGTGATACTTGGCATGATCGAGATCGCATTCATG
TTACTGTGCGGAGAGACAGAGCTCCTCCAGAGAGAGGAGGGGCTGGCACCAGCCAGGATGGGACCTCAAA
GAACTGGTTCAAGATTACAATTCCTTATGGCAGAAAGTATGACAAGGCATGGCTCCTGAGCATGATTCAG
AGCAAGTGCAGTGTGCCCTTCACCCCTATTGAGTTTCACTATGAGAATACACGGGCCCAGTTCTTCGTTG
AAGACGCCAGTACTGCCTCTGCATTGAAGGCTGTCAACTATAAGATTTTGGATCGGGAGAACCGAAGGAT
ATCTATCATCATCAACTCTTCTGCTCCACCCCACACTATACTGAATGAACTGAAGCCAGAACAAGTAGAA
CAGCTAAAGCTGATCATGAGCAAACGATACGATGGCTCCCAACAAGCCCTTGACCTCAAAGGCCTCCGTT
CAGACCCAGATTTGGTGGCCCAGAACATTGACGTTGTCCTGAATCGCAGAAGCTGTATGGCAGCTACCCT
GAGGATCATTGAAGAGAACATCCCTGAGCTATTGTCCTTGAACTTGAGCAACAACAGGCTGTACAGGCTG
GATGACATGTCTAGCATTGTTCAGAAGGCACCCAACCTGAAGATCCTAAACCTTTCTGGAAATGAATTGA
AGTCTGAGCGGGAATTGGACAAGATAAAGGGGCTGAAGCTAGAAGAGCTCTGGCTCGATGGAAACTCCCT
GTGTGACACCTTCCGAGACCAGTCCACCTACATCAGGTCAGTTGTAGCCTGTGTCTCCCCTCCTGGGGAC
CTTCACCCCCTGGGAGGCTGA

Translation (356 aa):
MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRV
RYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQ
SKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVE
QLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRL
DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSVVACVSPPGD
LHPLGG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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