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Report for CCDS24681.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24681.2 Public Mus musculus 11 Sowaha 23 108 98 CCDS HistoryNCBI Gene:237761Re-query CCDS DB by CCDS ID:24681.2Re-query CCDS DB by GeneID:237761See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 24681.2
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 24681.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000104955.3 ENSMUSP00000100561.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000104955.3Link to Ensembl Protein Viewer:ENSMUSP00000100561.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000104955Re-query CCDS DB by Protein ID:ENSMUSP00000100561
Original member Current member NCBI NM_183173.2 NP_898996.2 Accepted alive Link to Nucleotide Sequence:NM_183173.2Link to Protein Sequence:NP_898996.2Re-query CCDS DB by Nucleotide ID:NM_183173Re-query CCDS DB by Protein ID:NP_898996Link to BLAST:NP_898996.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898996.2 548 Q8BLS7 548 100% 0 0

Chromosomal Locations for CCDS 24681.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 53478261 53479907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGGCGCTGGCAGCCGCCGCCGCTGCCGCCGCTGCTGCCGCAGGGGTGAGCCAGGCGGCGGTGTTGGGCT
TCCTGCGGGAGCACGGCGGGCAGGTGCGCAACTCCGAGCTGCTGAGCCGCTTCAAGCCGCTGCTGGACGC
TGGGGACCCACGGGGCCGCGCGGCCCGTAGGGACCGCTTCAAGCAGTTCGTCAACAACGTGGCCGTGGTG
AAGGAGCTGGATGGGGTCAAGTTCGTGGTGCTGAGAAAGAAGCCCCGGCCGCCGGAAGGACCCGAGGCCC
CACTCCCCTCCAGCCCTGGAGTGCCAGCCGCGCTGGCCCAGTGCGCTGCTGTCCCAGCGGAGGACAACTG
TGCCCCCGGGGCTCCCCACTCCCCACAGCGATCAGGAGAACCGCCGGAGGACTCGTCCGCACCATCCGAG
CTACAGCACACCCCTGAGACCCTACCCTCAGAGGTCACCCAGGTTGAGGCGCCATCAGGCTCAGCGCCAC
AGCCCGGGGGGCCGGAGGATCCGGCGCTACCTCGGTCCTCGGAGCTAGCCCGACCCGCCAGCGTGCCGTC
GGGGCTGGCCCTGACGAGCACAGAGTCGCCAGGCCCGGAGCCTGCACCTCCCACGGCGCAAGTGCCACCG
CAGAAGCCTTGCATGCTGCCGGTGCGCTGCGTCGTTCCTGGCCCCGCGGCGCTGCGGATCCGCGCGGAGG
AGCAGGGCCTGCGCCGGCAGCGCTCGGAGGAGCCGAGCCCACGGGGCTCCCCGATGCTCCTGCGGAGGCT
TTCGGTAGAGGAGTCGGGTCTGGGACTCCACCTGGGACCCGGCCGTTCCCCGCATCTCAGGCGCCTGTCC
CGCGCCGGTCCGCGCCTGCTGAGTCCGGACACGGAGGAGATGCCCGTCGCGCCGCTACCGTCACCCGCGG
TGCCCCTGGAGCCCACGGAGCACGAGTGGCTGGTGCGCACGGCCAGCGGTCGTTGGAGTCACCAGCTGCA
CGGGTTGCTCTTGCGGGACCGCGGCCTGGCTGCCAAGCGCGACTTCATGTCCGGCTTCACCGCGCTACAC
TGGGCGGCCAAGAACGGCGACCGGGAGATGGCTTTACAGCTGGTGGAGGTGGCGCGGCGTGGAGGCGCGC
CCGTGGACGTGAACGCGCGCTCTCACGGTGGCTACACGCCGCTGCACCTGGCGGCTCTGCACGGCCACGA
GGATGCTGCTGTGCTGCTAGTGGTGCGCTTGGGTGCCCAAGTGCACGTCCGCGACTACAGCGGCCGGCGT
GCCTACCAGTACCTACGGCCTGGCTCCTCCTACGCGCTGAGGCGTTTACTGGGTGACCCTGGCCTGCGAT
CTATGATGGAGCCTGATGCGGCCAGTGGTGGCAGTGGGAGCCTTGTGTCTCGGCACCCCGTGCAGGTAGC
CGCCACCATCCTCAGCTCCACCACTAGTGCGTTTCTGGGCGTCCTGGCCGATGACTTGATGCTCCAGGAC
CTGGCTCGTGGCTTGAAGAAGTCAAGTTCCTTCAGCAAGTTCTTGGGTGCCTCGCCCATGGCTCCCCGAA
AAAAGACCAAGATTCGCGGTGGCCTGCCGTCCTTCACCGAAATCTCTCATCGATCCACTCCAGGACCTTT
AGCTGGTTTAGTGCCCAGTCTGCCCCCTCCAACCTGA

Translation (548 aa):
MALAAAAAAAAAAAGVSQAAVLGFLREHGGQVRNSELLSRFKPLLDAGDPRGRAARRDRFKQFVNNVAVV
KELDGVKFVVLRKKPRPPEGPEAPLPSSPGVPAALAQCAAVPAEDNCAPGAPHSPQRSGEPPEDSSAPSE
LQHTPETLPSEVTQVEAPSGSAPQPGGPEDPALPRSSELARPASVPSGLALTSTESPGPEPAPPTAQVPP
QKPCMLPVRCVVPGPAALRIRAEEQGLRRQRSEEPSPRGSPMLLRRLSVEESGLGLHLGPGRSPHLRRLS
RAGPRLLSPDTEEMPVAPLPSPAVPLEPTEHEWLVRTASGRWSHQLHGLLLRDRGLAAKRDFMSGFTALH
WAAKNGDREMALQLVEVARRGGAPVDVNARSHGGYTPLHLAALHGHEDAAVLLVVRLGAQVHVRDYSGRR
AYQYLRPGSSYALRRLLGDPGLRSMMEPDAASGGSGSLVSRHPVQVAATILSSTTSAFLGVLADDLMLQD
LARGLKKSSSFSKFLGASPMAPRKKTKIRGGLPSFTEISHRSTPGPLAGLVPSLPPPT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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