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Report for CCDS39103.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39103.1 Public Mus musculus 5 Slc30a9 23 108 98 CCDS HistoryNCBI Gene:109108Re-query CCDS DB by CCDS ID:39103.1Re-query CCDS DB by GeneID:109108See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39103.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162372.7 ENSMUSP00000124047.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162372.7Link to Ensembl Protein Viewer:ENSMUSP00000124047.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162372Re-query CCDS DB by Protein ID:ENSMUSP00000124047
Original member Current member NCBI NM_178651.4 NP_848766.2 Accepted alive Link to Nucleotide Sequence:NM_178651.4Link to Protein Sequence:NP_848766.2Re-query CCDS DB by Nucleotide ID:NM_178651Re-query CCDS DB by Protein ID:NP_848766Link to BLAST:NP_848766.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848766.2 567 Q5IRJ6-1 567 100% 0 0

Chromosomal Locations for CCDS 39103.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 67307095 67307197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67315678 67315845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67324674 67324733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67326853 67326952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67327698 67327790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67328442 67328524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67329893 67329951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67333054 67333121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67334566 67334668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67339951 67340006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67342094 67342229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67344530 67344569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67345626 67345697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67346126 67346233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67347920 67348085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67349782 67349911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67352652 67352765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67354532 67354576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1704 nt):
ATGTTTCCGGGCTTGGCCGCCGCCGCCGCGGCGCACAGGTGCAGCTGGGCGGCGCTGTGCAGGCTCGGTG
GCGGCCGGGCAGCGACCCGCGGCCGCAGCCAGGGATGGAAGAATGTAATGACATTTGAAAGCTTTACATA
TGTGGTTCCCGACATTCACCCACATTTATCTATTATAAATCAAGTCAAGTTGTACTCTACGAATGTCCAG
AAAGGAGGGCAGGGCTCACAGACTCCAAAAGCTGACAAAGTCCCATCACTTACACAAACAGTAGAAAATA
TAGGCGCAGAACTCAAAGCTCCACTTAAGCAAGACCCTCTCCAAGTAAGAGTCAAAGCAGTCCTTAAGAA
AAGGGATTATGGATCAAAATACACTAAGAATAATTTCATCACTGGAGTGAGAGCAATAAACGAGTTCTGC
CTTAAGTCCAGTGATTTAGAACAACTTCGAAAAATCAGGCGGCGAAGTCCCCACGATGACACCGAGTCCT
TTACTGTGTTCTTGAGGTCAGATGTGGAAGCAAAAGCTTTGGAAGTTTGGGGAAGCCTTGAAGCTCTTGC
CAGAGAGAAAAAATTGCGTAAAGAAGCAGAAATAGAATACAGAGAACGGCTATTTAGAAACCAAAGAATA
TTAAGAGAATATGGTGATTTCTTGGGAAACACAAAGCCACGTTCCAGAGCGGTCTCAGTGTTCCTTAAGG
GACCAGGAAAAGTGGTCATGGTTGCTATTTGCATTAATGGCTTAAACTGCTTCTTTAAATTTCTTGCCTG
GATTTATACGGGTTCAGCAAGTATGTTCTCAGAAGCTATACACTCATTATCTGATACTTGTAACCAGGGC
TTGCTAGCACTGGGCATCAGCAAATCTGTTCAAACACCAGATCCTTCTCACCCGTACGGCTTTTCAAATA
TGCGCTATATTTCTTCATTGATTAGTGGTGTTGGTATTTTCATGATGGGCGCAGGACTCTCTTGGTATCA
TGGAATCATGGGATTACTTCATCCTCAACCAATGGAATCCCTGCTATGGGCATATTGTATTTTAGCAGGA
TCTTTGGTGTCTGAAGGAGCAACACTTCTCGTTGCCATAAATGAACTTCGCAGGAGCGCGCAGGCCAAGG
GCACGACATTTTATAAGTATGTCATGGAAAGTCGTGATCCGAGTACAAATGTTATTCTATTGGAGGACAC
TGCAGCTGTCTTAGGAGTGATAATAGCGGCTACCTGCATGGGCCTTACCTCCATAACAGGCAATCCACTG
TATGACAGCCTGGGTTCCTTGGGTGTAGGCACCTTACTAGGTGTGGTCTCGGCATTCCTCATCTATACCA
ACACAGAAGCACTCCTAGGACGCTCCATCCAACCGGAGCAAGTGCAGCGGCTTACTGAACTCCTGGAGAG
CGACCCGTCAGTAAGGGCAATCCATGATGTTAAAGCCACAGATTTGGGATTAGGGAAAGTCAGATTTAAG
GCAGAAGTTGATTTTGATGGACGAGTTGTTACGAGATCATATTTGGAAAAGCAAGATTTTGACCAAATGA
TGCAAGAAATTCAAGAAGTGAAGACTCCTGAACAATTAGAAGCCTTTATGCTTAAACATGGAGAAAATAT
TATTGATACTCTAGGAGCTGAAGTAGACAGACTTGAGAAAGAGCTGAAAAAACGAAACCCTGAAGTTCGG
CACGTAGACCTTGAGATCCTATAG

Translation (567 aa):
MFPGLAAAAAAHRCSWAALCRLGGGRAATRGRSQGWKNVMTFESFTYVVPDIHPHLSIINQVKLYSTNVQ
KGGQGSQTPKADKVPSLTQTVENIGAELKAPLKQDPLQVRVKAVLKKRDYGSKYTKNNFITGVRAINEFC
LKSSDLEQLRKIRRRSPHDDTESFTVFLRSDVEAKALEVWGSLEALAREKKLRKEAEIEYRERLFRNQRI
LREYGDFLGNTKPRSRAVSVFLKGPGKVVMVAICINGLNCFFKFLAWIYTGSASMFSEAIHSLSDTCNQG
LLALGISKSVQTPDPSHPYGFSNMRYISSLISGVGIFMMGAGLSWYHGIMGLLHPQPMESLLWAYCILAG
SLVSEGATLLVAINELRRSAQAKGTTFYKYVMESRDPSTNVILLEDTAAVLGVIIAATCMGLTSITGNPL
YDSLGSLGVGTLLGVVSAFLIYTNTEALLGRSIQPEQVQRLTELLESDPSVRAIHDVKATDLGLGKVRFK
AEVDFDGRVVTRSYLEKQDFDQMMQEIQEVKTPEQLEAFMLKHGENIIDTLGAEVDRLEKELKKRNPEVR
HVDLEIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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