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Report for CCDS19542.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19542.1 Public Mus musculus 5 Asphd2 23 108 98 CCDS HistoryNCBI Gene:72898Re-query CCDS DB by CCDS ID:19542.1Re-query CCDS DB by GeneID:72898See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19542.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031291.8 ENSMUSP00000031291.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031291.8Link to Ensembl Protein Viewer:ENSMUSP00000031291.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031291Re-query CCDS DB by Protein ID:ENSMUSP00000031291
Original member Current member NCBI NM_001357011.1 NP_001343940.1 Accepted alive Link to Nucleotide Sequence:NM_001357011.1Link to Protein Sequence:NP_001343940.1Re-query CCDS DB by Nucleotide ID:NM_001357011Re-query CCDS DB by Protein ID:NP_001343940Link to BLAST:NP_001343940.1
Original member Current member NCBI NM_001357012.1 NP_001343941.1 Accepted alive Link to Nucleotide Sequence:NM_001357012.1Link to Protein Sequence:NP_001343941.1Re-query CCDS DB by Nucleotide ID:NM_001357012Re-query CCDS DB by Protein ID:NP_001343941Link to BLAST:NP_001343941.1
Original member Current member NCBI NM_001357013.1 NP_001343942.1 Accepted alive Link to Nucleotide Sequence:NM_001357013.1Link to Protein Sequence:NP_001343942.1Re-query CCDS DB by Nucleotide ID:NM_001357013Re-query CCDS DB by Protein ID:NP_001343942Link to BLAST:NP_001343942.1
Original member Current member NCBI NM_001357014.1 NP_001343943.1 Accepted alive Link to Nucleotide Sequence:NM_001357014.1Link to Protein Sequence:NP_001343943.1Re-query CCDS DB by Nucleotide ID:NM_001357014Re-query CCDS DB by Protein ID:NP_001343943Link to BLAST:NP_001343943.1
Original member Current member NCBI NM_001357015.1 NP_001343944.1 Accepted alive Link to Nucleotide Sequence:NM_001357015.1Link to Protein Sequence:NP_001343944.1Re-query CCDS DB by Nucleotide ID:NM_001357015Re-query CCDS DB by Protein ID:NP_001343944Link to BLAST:NP_001343944.1
Original member Current member NCBI NM_028386.2 NP_082662.1 Accepted alive Link to Nucleotide Sequence:NM_028386.2Link to Protein Sequence:NP_082662.1Re-query CCDS DB by Nucleotide ID:NM_028386Re-query CCDS DB by Protein ID:NP_082662Link to BLAST:NP_082662.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343940.1 343 Q80VP9 343 100% 0 0
NP_001343941.1 343 Q80VP9 343 100% 0 0
NP_001343942.1 343 Q80VP9 343 100% 0 0
NP_001343943.1 343 Q80VP9 343 100% 0 0
NP_001343944.1 343 Q80VP9 343 100% 0 0
NP_082662.1 343 Q80VP9 343 100% 0 0

Chromosomal Locations for CCDS 19542.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 112385752 112385861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112386759 112386872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112391158 112391965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGTGGCTGGAGTGGTTGGTGGCCTGGAGCTGGTCTCTGGATGGCCTGAGGGACTGCATTGCCACCGGTA
TCCAGTCAGTGCGGGACTGCGATGGCACAGCCGTCATCACCGTGGCCTGCCTGCTCATCCTGTTTGTGTG
GTACTGTTACCACGTGGGCCGCGAGCAGCCCCGCCCCCACGTGTCTGTCAACTCCCTCCTGCAGGGCGTG
GATGCCAACGGGCTGCAGAATGGGTCCATGTACTGCCAGTCACCAGAGTGTGCGCGCTGCACACACCACG
AAGGCCTCAACCAGAAGCTCTACCACAACCTGCAGGAATACGCCAAGCGGTACTCATGGTCCGGCATGGG
CCGCATTCACAAGGGCATCCGGGAGCAGGGCCGCTACCTCAGCAGCCAGCCCTCCATCCAGAAGCCCGAG
GTCTTCTTCCTGCCTGACCTCCCCACTACGCCCTACTTCTCCCGGGATGCCCAGAAGCACGATGTGGAGC
TGTTGGAGCGGAACTTCCAGGCGATCCTCTGCGAGTTCGAGACTCTCTACAAAGCCTTCTCTAACTGCAG
CCTCCCTCAAGGGTGGAAAGTGAACAGCACCCCCAGTGGGGAGTGGTTCACCTTTGACTTTGTCAGCCAG
GGCGTTTGTGTCCCCAGGAACTGCAGGAAGTGCCCGCGGACTTACCGCTTGCTCGGCAGCCTCCGGACCT
GTATTGGGAACAATGTTTTCGGGAACGCCTGCATCTCAGTGCTGAGCCCTGGGACTGTGATCACGGAGCA
CTACGGACCCACAAACATCCGCATCCGATGCCACCTAGGTTTGAAGACTCCCAATGGCTGCGAGCTGGTG
GTGGGGGGCGAGCCCCAGTGCTGGGCAGAAGGCCGATGCTTACTCTTTGATGACTCGTTCCTGCACACTG
CGTTCCATGAAGGTTCCGCTGAGGATGGCCCACGGGTGGTCTTCATGGTAGACCTCTGGCACCCCAACGT
GGCAGCTGCTGAACGTCAGGCCCTGGATTTCATCTTTGCTCCGGGACGATGA

Translation (343 aa):
MWLEWLVAWSWSLDGLRDCIATGIQSVRDCDGTAVITVACLLILFVWYCYHVGREQPRPHVSVNSLLQGV
DANGLQNGSMYCQSPECARCTHHEGLNQKLYHNLQEYAKRYSWSGMGRIHKGIREQGRYLSSQPSIQKPE
VFFLPDLPTTPYFSRDAQKHDVELLERNFQAILCEFETLYKAFSNCSLPQGWKVNSTPSGEWFTFDFVSQ
GVCVPRNCRKCPRTYRLLGSLRTCIGNNVFGNACISVLSPGTVITEHYGPTNIRIRCHLGLKTPNGCELV
VGGEPQCWAEGRCLLFDDSFLHTAFHEGSAEDGPRVVFMVDLWHPNVAAAERQALDFIFAPGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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