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Report for CCDS45976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45976.1 Public Homo sapiens 19 CCDC159 24 110 108 CCDS HistoryNCBI Gene:126075Re-query CCDS DB by CCDS ID:45976.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45976.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000458408.6 ENSP00000402239.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000458408.6Link to Ensembl Protein Viewer:ENSP00000402239.1Re-query CCDS DB by Nucleotide ID:ENST00000458408Re-query CCDS DB by Protein ID:ENSP00000402239
Original member Current member EBI ENST00000588790.5 ENSP00000468232.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000588790.5Link to Ensembl Protein Viewer:ENSP00000468232.1Re-query CCDS DB by Nucleotide ID:ENST00000588790Re-query CCDS DB by Protein ID:ENSP00000468232
Original member Current member NCBI NM_001080503.3 NP_001073972.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080503.3Link to Protein Sequence:NP_001073972.2Re-query CCDS DB by Nucleotide ID:NM_001080503Re-query CCDS DB by Protein ID:NP_001073972Link to BLAST:NP_001073972.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073972.2 297 P0C7I6-2 297 100% 0 0

Chromosomal Locations for CCDS 45976.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11346607 11346627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11349654 11349687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11349938 11350026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11350118 11350199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11350808 11351003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11351906 11351973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11352057 11352133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11353451 11353572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11353792 11353874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11354580 11354696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11354873 11354877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGGGAGAGCATGAACAGGTGAAGCCCTTGGAGACCAGCTCTTCCAAAGTCAAAGCCAAGACCATTGTGA
TGATTCCCGACTCCCAGAAGCTCCTGCGATGTGAACTTGAGTCACTCAAGAGCCAGTTACAGGCCCAGAC
CAAGGCTTTCGAGTTCCTGAACCACTCAGTGACCATGTTGGAGAAGGAGAGCTGCTTGCAGCAAATCAAG
ATTCAGCAGCTTGAAGAGGTGCTGAGCCCCACAGGCCGCCAGGGAGAGAAGGAGGAGCACAAGTGGGGCA
TGGAGCAGGGCCGGCAGGAGCTGTATGGGGCCCTGACCCAAGGCCTTCAGGGGCTGGAGAAGACCCTGCG
TGACAGTGAGGAGATGCAGCGGGCCCGCACCACTCGCTGCCTGCAGCTGCTGGCCCAGGAGATCCGGGAC
AGCAAGAAGTTCCTGTGGGAGGAGCTGGAACTGGTGCGGGAGGAGGTGACCTTCATCTATCAGAAGCTCC
AAGCGCAGGAGGATGAGATCTCAGAGAACTTGGTGAACATTCAGAAAATGCAGAAAACGCAGGTGAAATG
CCGCAAAATCCTGACCAAGATGAAGCAGCAGGGTCATGAGACAGCCGCCTGTCCGGAGACTGAAGAGATA
CCGCAGGGAGCCAGTGGCTGCTGGAAGGATGACCTCCAGAAGGAACTGAGTGATATATGGTCTGCTGTGC
ACGTGCTGCAGAACTCCATAGACAGCCTCACTTTGTGCTCGGGGGCCTGTCCCAAGGCCTCGAGCCTAAG
AGGCCACAAGGGGCACCAGTGCCTGAGCCCTCCACTCCCCTCCTGGGACTCTGACTCCGACTGTGACCAG
GACCTCTCCCAGCCACCTTTCAGCAAGAGCGGCCGCTCCTTCCCACCCGCTTGA

Translation (297 aa):
MGEHEQVKPLETSSSKVKAKTIVMIPDSQKLLRCELESLKSQLQAQTKAFEFLNHSVTMLEKESCLQQIK
IQQLEEVLSPTGRQGEKEEHKWGMEQGRQELYGALTQGLQGLEKTLRDSEEMQRARTTRCLQLLAQEIRD
SKKFLWEELELVREEVTFIYQKLQAQEDEISENLVNIQKMQKTQVKCRKILTKMKQQGHETAACPETEEI
PQGASGCWKDDLQKELSDIWSAVHVLQNSIDSLTLCSGACPKASSLRGHKGHQCLSPPLPSWDSDSDCDQ
DLSQPPFSKSGRSFPPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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