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Report for CCDS18932.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18932.1 Public Mus musculus 4 Mad2l2 23 108 98 CCDS HistoryNCBI Gene:71890Re-query CCDS DB by CCDS ID:18932.1Re-query CCDS DB by GeneID:71890See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18932.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030860.8 ENSMUSP00000030860.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030860.8Link to Ensembl Protein Viewer:ENSMUSP00000030860.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000030860Re-query CCDS DB by Protein ID:ENSMUSP00000030860
Original member Current member EBI ENSMUST00000084129.8 ENSMUSP00000081146.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084129.8Link to Ensembl Protein Viewer:ENSMUSP00000081146.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000084129Re-query CCDS DB by Protein ID:ENSMUSP00000081146
Original member Current member NCBI NM_001305420.1 NP_001292349.1 Accepted alive Link to Nucleotide Sequence:NM_001305420.1Link to Protein Sequence:NP_001292349.1Re-query CCDS DB by Nucleotide ID:NM_001305420Re-query CCDS DB by Protein ID:NP_001292349Link to BLAST:NP_001292349.1
Original member Current member NCBI NM_027985.3 NP_082261.2 Accepted alive Link to Nucleotide Sequence:NM_027985.3Link to Protein Sequence:NP_082261.2Re-query CCDS DB by Nucleotide ID:NM_027985Re-query CCDS DB by Protein ID:NP_082261Link to BLAST:NP_082261.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292349.1 211 Q9D752 211 100% 0 0
NP_082261.2 211 Q9D752 211 100% 0 0

Chromosomal Locations for CCDS 18932.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 148140795 148140834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148140915 148141033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148142986 148143057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148143542 148143642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148144264 148144358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148144654 148144727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148145104 148145196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148145372 148145413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGACCACCCTCACGCGCCAAGACCTCAACTTTGGCCAAGTGGTGGCTGACGTGCTCTCCGAGTTCCTGG
AGGTGGCCGTGCACCTGATTCTCTATGTGCGCGAGGTCTACCCGGTGGGCATCTTCCAGAAGCGCAAGAA
GTACAACGTGCCGGTTCAGATGTCCTGTCACCCGGAGCTGAACCAGTACATCCAGGACACACTCCACTGC
GTCAAACCTCTCCTGGAGAAGAACGATGTGGAGAAGGTGGTGGTGGTGATTTTGGATAAGGAACACCGCC
CAGTGGAGAAGTTTGTCTTTGAGATCACTCAGCCTCCCTTGCTGTCCATCAATTCAGACTCCCTCCTGTC
TCATGTGGAGCAGCTGCTTCGAGCCTTCATCCTTAAGATTAGTGTGTGTGATGCTGTCCTGGATCACAAC
CCTCCAGGCTGCACATTTACAGTCCTCGTGCACACAAGAGAAGCTGCTACTCGAAACATGGAGAAGATAC
AGGTCATCAAGGACTTCCCATGGATCCTGGCAGATGAACAGGATGTCCACATGCACGACCCCCGCTTGAT
ACCCCTAAAAACCATGACGTCGGACATTTTAAAGATGCAGCTCTACGTTGAAGAGCGAGCGCATAAGAAC
AGCTGA

Translation (211 aa):
MTTLTRQDLNFGQVVADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHC
VKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSINSDSLLSHVEQLLRAFILKISVCDAVLDHN
PPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVHMHDPRLIPLKTMTSDILKMQLYVEERAHKN
S


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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