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Report for CCDS52348.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52348.1 Public Mus musculus 7 Or56b34 23 108 98 CCDS HistoryNCBI Gene:259161Re-query CCDS DB by CCDS ID:52348.1Re-query CCDS DB by GeneID:259161See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52348.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098155.2 ENSMUSP00000095758.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098155.2Link to Ensembl Protein Viewer:ENSMUSP00000095758.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098155Re-query CCDS DB by Protein ID:ENSMUSP00000095758
Original member Current member NCBI NM_001011533.2 NP_001011533.2 Accepted alive Link to Nucleotide Sequence:NM_001011533.2Link to Protein Sequence:NP_001011533.2Re-query CCDS DB by Nucleotide ID:NM_001011533Re-query CCDS DB by Protein ID:NP_001011533Link to BLAST:NP_001011533.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001011533.2 321 Q6W049 321 100% 0 0

Chromosomal Locations for CCDS 52348.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 105288095 105289060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGGGTACTGCCCTGCATGAAACCAACAGCTCAGAGGTCCACGTGTCTGAGTTCATTCTGCTGGGATTCC
CAGGCATTCATGAATTCCAGATCTGGCTGTCCTTGCCTATGGCTCTGCTTTACATTGTAGCTCTTGGTGC
TAATCTCCTTATCTTGATCACCATCTACCTTGAGCCTACCCTGCATCAGCCAATGTATCAGTTTCTTGGG
ATCTTGGCTGCAGTAGATATTGGCTTGGCTACCACCAGCATGCCCAAAATACTGGCCATCTTGTGGTTTG
ATGCCAAGACCATCAGCCTCCCTGAGTGTTTTGCTCAGATCTATGCTATCCACACTTTTATGTGCATGGA
GTCAGGCGTCTTCCTATGCATGGCAATAGATAGATATGTAGCCATTTGTTATCCCCTCCAGTATCCTTCC
ATAGTCACTGAAGCTTTTGTAATCAAGGCCACACTGTCCATGCTGCTCAGGAATGGCCTGTTAACCATCC
CAGTGCCTGTACTAGCTGCCCAGAGACAATACTGCTCCAGGAATGAAATAGATCACTGCCTTTGCTCTAA
CTTGGGGGTCATTAGTCTGGCCTGTGATGATATCACTGTTAACAGATTCTACCAGTTGGCATTGGCCTGG
CTTGTGGTAGGAAGTGACATGATTCTGGTCTATGCTTCTTACGCTTTGATTATTCGCTCAGTGCTGAGGC
TGAACTCCACTGAGGCAGCATCTAAGGCCCTCAGCACCTGCAGCTCCCACCTCATCCTCATTATGTTTTA
CTACACAGCTATTGTTATAGTATCTGTTACTCACCTAGCAGGAAGAAGGGTTCCCCTCATCCCTGTTCTC
CTCAATGTGATGCATATTGTCATCCCTCCATCCCTTAACCCCGTGGTATATGCCCTTAGGACACAGGAGC
TGAAAGTGGGCTTCCGGAAGGTTTTTAGCCTGAGTGAGTTTGTGTCTAGGAAGTAA

Translation (321 aa):
MGTALHETNSSEVHVSEFILLGFPGIHEFQIWLSLPMALLYIVALGANLLILITIYLEPTLHQPMYQFLG
ILAAVDIGLATTSMPKILAILWFDAKTISLPECFAQIYAIHTFMCMESGVFLCMAIDRYVAICYPLQYPS
IVTEAFVIKATLSMLLRNGLLTIPVPVLAAQRQYCSRNEIDHCLCSNLGVISLACDDITVNRFYQLALAW
LVVGSDMILVYASYALIIRSVLRLNSTEAASKALSTCSSHLILIMFYYTAIVIVSVTHLAGRRVPLIPVL
LNVMHIVIPPSLNPVVYALRTQELKVGFRKVFSLSEFVSRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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