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Report for CCDS48388.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48388.1 Public Mus musculus 1 Cfh 23 108 98 CCDS HistoryNCBI Gene:12628Re-query CCDS DB by CCDS ID:48388.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48388.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111976.8 ENSMUSP00000107607.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111976.8Link to Ensembl Protein Viewer:ENSMUSP00000107607.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111976Re-query CCDS DB by Protein ID:ENSMUSP00000107607
Original member Current member NCBI NM_009888.3 NP_034018.2 Accepted alive Link to Nucleotide Sequence:NM_009888.3Link to Protein Sequence:NP_034018.2Re-query CCDS DB by Nucleotide ID:NM_009888Re-query CCDS DB by Protein ID:NP_034018Link to BLAST:NP_034018.2

Chromosomal Locations for CCDS 48388.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 140086326 140086522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140088658 140088840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140098870 140099046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140100808 140100984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140101585 140101758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140102337 140102546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140102708 140102884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140105395 140105571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140108492 140108671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140108758 140108940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140112433 140112606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140118587 140118763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140119871 140120053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140136147 140136323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140136696 140136890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140143931 140144104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140147655 140147825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140154469 140154660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140157260 140157336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140162546 140162651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140162951 140163136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 140183165 140183276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3759 nt):
ATGGTACAGCACAGATTTCTCTTGGAGTCAGTTGGTCCCAGAAAGATCCAAATTATGAGACTGTCAGCAA
GAATTATTTGGCTTATATTATGGACTGTTTGTGCAGCAGAAGATTGTAAAGGTCCTCCTCCAAGAGAAAA
TTCAGAAATTCTCTCAGGCTCGTGGTCAGAACAACTATATCCAGAAGGCACCCAGGCTACCTACAAATGC
CGCCCTGGATACCGAACACTTGGCACTATTGTAAAAGTATGCAAGAATGGAAAATGGGTGGCGTCTAACC
CATCCAGGATATGTCGGAAAAAGCCTTGTGGGCATCCCGGAGACACACCCTTTGGGTCCTTTAGGCTGGC
AGTTGGATCTCAATTTGAGTTTGGTGCAAAGGTTGTTTATACCTGTGATGATGGGTATCAACTATTAGGT
GAAATTGATTACCGTGAATGTGGTGCAGATGGGTGGATCAATGATATTCCACTATGTGAAGTTGTGAAGT
GTCTACCTGTGACAGAACTCGAGAATGGAAGAATTGTGAGTGGTGCAGCAGAAACAGACCAGGAATACTA
TTTTGGACAGGTGGTGCGGTTTGAATGCAATTCAGGCTTCAAGATTGAAGGACATAAGGAAATTCATTGC
TCAGAAAATGGCCTTTGGAGCAATGAAAAGCCACGATGTGTGGAAATTCTCTGCACACCACCGCGAGTGG
AAAATGGAGATGGTATAAATGTGAAACCAGTTTACAAGGAGAATGAAAGATACCACTATAAGTGTAAGCA
TGGTTATGTGCCCAAAGAAAGAGGGGATGCCGTCTGCACAGGCTCTGGATGGAGTTCTCAGCCTTTCTGT
GAAGAAAAGAGATGCTCACCTCCTTATATTCTAAATGGTATCTACACACCTCACAGGATTATACACAGAA
GTGATGATGAAATCAGATATGAATGTAATTATGGCTTCTATCCTGTAACTGGATCAACTGTTTCAAAGTG
TACACCCACTGGCTGGATCCCTGTTCCAAGATGTACCTTGAAACCATGTGAATTTCCACAATTCAAATAT
GGACGTCTGTATTATGAAGAGAGCCTGAGACCCAACTTCCCAGTATCTATAGGAAATAAGTACAGCTATA
AGTGTGACAACGGGTTTTCACCACCTTCTGGGTATTCCTGGGACTACCTTCGTTGCACAGCACAAGGGTG
GGAGCCTGAAGTCCCATGCGTCAGGAAATGTGTTTTCCATTATGTGGAGAATGGAGACTCTGCATACTGG
GAAAAAGTATATGTGCAGGGTCAGTCTTTAAAAGTCCAGTGTTACAATGGCTATAGTCTTCAAAATGGTC
AAGACACAATGACATGTACAGAGAATGGCTGGTCCCCTCCTCCCAAATGCATCCGTATCAAGACATGTTC
AGCATCAGATATACACATTGACAATGGATTTCTTTCTGAATCTTCTTCTATATATGCTCTAAATAGAGAA
ACATCCTATAGATGTAAGCAGGGATATGTGACAAATACTGGAGAAATATCAGGATCAATAACTTGCCTTC
AAAATGGATGGTCACCTCAACCCTCATGCATTAAGTCTTGTGATATGCCTGTATTTGAGAATTCTATAAC
TAAGAATACTAGGACATGGTTTAAGCTCAATGACAAATTAGACTATGAATGTCTCGTTGGATTTGAAAAT
GAATATAAACATACCAAAGGCTCTATAACATGTACTTATTATGGATGGTCTGATACACCCTCATGTTATG
AAAGAGAATGCAGTGTTCCCACTCTAGACCGAAAACTAGTCGTTTCCCCCAGAAAAGAAAAATACAGAGT
TGGAGATTTGTTGGAATTCTCCTGCCATTCAGGACACAGAGTTGGGCCAGATTCAGTGCAATGCTACCAC
TTTGGATGGTCTCCTGGTTTCCCTACATGTAAAGGTCAAGTAGCATCATGTGCACCACCTCTTGAAATTC
TTAATGGGGAAATTAATGGAGCAAAAAAAGTTGAATACAGCCATGGTGAAGTGGTGAAATATGATTGCAA
ACCTAGATTCCTACTGAAGGGACCCAATAAAATCCAGTGTGTTGATGGGAATTGGACAACCTTGCCTGTA
TGTATTGAGGAGGAGAGAACATGTGGAGACATTCCTGAACTTGAACATGGCTCTGCCAAGTGTTCTGTTC
CTCCCTACCACCATGGAGATTCAGTGGAGTTCATTTGTGAAGAAAACTTCACAATGATTGGACATGGGTC
AGTTTCTTGCATTAGTGGAAAATGGACCCAGCTTCCTAAATGTGTTGCAACAGACCAACTGGAGAAGTGT
AGAGTGCTGAAGTCAACTGGCATAGAAGCAATAAAACCAAAATTGACTGAATTTACGCATAACTCCACCA
TGGATTACAAATGTAGAGACAAGCAGGAGTACGAACGCTCAATCTGTATCAATGGAAAATGGGATCCTGA
ACCAAACTGTACAAGCAAAACATCCTGCCCTCCTCCACCGCAGATTCCAAATACCCAAGTGATTGAAACC
ACCGTGAAATACTTGGATGGAGAAAAATTATCTGTTCTTTGCCAAGACAATTACCTAACTCAGGACTCAG
AAGAAATGGTGTGCAAAGATGGAAGGTGGCAGTCATTACCTCGCTGCATTGAAAAAATTCCATGTTCCCA
GCCCCCTACAATAGAACATGGATCTATTAATTTACCCAGATCTTCAGAAGAAAGGAGAGATTCCATTGAG
TCCAGCAGTCATGAACATGGAACTACATTCAGCTATGTCTGTGATGATGGTTTCAGGATACCTGAAGAAA
ATAGGATAACCTGCTACATGGGAAAATGGAGCACTCCACCTCGCTGTGTTGGACTTCCTTGTGGACCTCC
ACCTTCAATTCCTCTTGGTACTGTTTCTCTTGAGCTAGAGAGTTACCAACATGGGGAAGAGGTTACATAC
CATTGTTCTACAGGCTTTGGAATTGATGGACCAGCATTTATTATATGCGAAGGAGGAAAGTGGTCTGACC
CACCAAAATGCATAAAAACGGATTGTGACGTTTTACCCACAGTTAAAAATGCCATAATAAGAGGAAAGAG
CAAAAAATCATATAGGACAGGAGAACAAGTGACATTCAGATGTCAATCTCCTTATCAAATGAATGGCTCA
GACACTGTGACATGTGTTAATAGTCGGTGGATTGGACAGCCAGTATGCAAAGATAATTCCTGTGTGGATC
CACCACATGTGCCAAATGCTACTATAGTAACAAGGACCAAGAATAAATATCTACATGGTGACAGAGTACG
TTATGAATGTAATAAACCTTTGGAACTATTTGGGCAAGTGGAAGTGATGTGTGAAAATGGGATATGGACA
GAAAAACCAAAGTGCCGAGACTCAACAGGGAAATGTGGGCCTCCTCCACCTATTGACAATGGAGACATCA
CCTCCTTGTCATTACCAGTATATGAACCATTATCATCAGTTGAATATCAATGCCAGAAGTATTATCTCCT
TAAGGGAAAGAAGACAATAACATGTAGAAATGGAAAGTGGTCTGAGCCACCAACATGCTTACATGCATGT
GTAATACCAGAAAACATTATGGAATCACACAATATAATTCTCAAATGGAGACACACTGAAAAGATTTATT
CCCATTCAGGGGAGGATATTGAATTTGGATGTAAATATGGATATTATAAAGCAAGAGATTCACCGCCATT
TCGTACAAAGTGCATTAATGGCACCATCAATTATCCCACTTGTGTATAA

Translation (1252 aa):
MVQHRFLLESVGPRKIQIMRLSARIIWLILWTVCAAEDCKGPPPRENSEILSGSWSEQLYPEGTQATYKC
RPGYRTLGTIVKVCKNGKWVASNPSRICRKKPCGHPGDTPFGSFRLAVGSQFEFGAKVVYTCDDGYQLLG
EIDYRECGADGWINDIPLCEVVKCLPVTELENGRIVSGAAETDQEYYFGQVVRFECNSGFKIEGHKEIHC
SENGLWSNEKPRCVEILCTPPRVENGDGINVKPVYKENERYHYKCKHGYVPKERGDAVCTGSGWSSQPFC
EEKRCSPPYILNGIYTPHRIIHRSDDEIRYECNYGFYPVTGSTVSKCTPTGWIPVPRCTLKPCEFPQFKY
GRLYYEESLRPNFPVSIGNKYSYKCDNGFSPPSGYSWDYLRCTAQGWEPEVPCVRKCVFHYVENGDSAYW
EKVYVQGQSLKVQCYNGYSLQNGQDTMTCTENGWSPPPKCIRIKTCSASDIHIDNGFLSESSSIYALNRE
TSYRCKQGYVTNTGEISGSITCLQNGWSPQPSCIKSCDMPVFENSITKNTRTWFKLNDKLDYECLVGFEN
EYKHTKGSITCTYYGWSDTPSCYERECSVPTLDRKLVVSPRKEKYRVGDLLEFSCHSGHRVGPDSVQCYH
FGWSPGFPTCKGQVASCAPPLEILNGEINGAKKVEYSHGEVVKYDCKPRFLLKGPNKIQCVDGNWTTLPV
CIEEERTCGDIPELEHGSAKCSVPPYHHGDSVEFICEENFTMIGHGSVSCISGKWTQLPKCVATDQLEKC
RVLKSTGIEAIKPKLTEFTHNSTMDYKCRDKQEYERSICINGKWDPEPNCTSKTSCPPPPQIPNTQVIET
TVKYLDGEKLSVLCQDNYLTQDSEEMVCKDGRWQSLPRCIEKIPCSQPPTIEHGSINLPRSSEERRDSIE
SSSHEHGTTFSYVCDDGFRIPEENRITCYMGKWSTPPRCVGLPCGPPPSIPLGTVSLELESYQHGEEVTY
HCSTGFGIDGPAFIICEGGKWSDPPKCIKTDCDVLPTVKNAIIRGKSKKSYRTGEQVTFRCQSPYQMNGS
DTVTCVNSRWIGQPVCKDNSCVDPPHVPNATIVTRTKNKYLHGDRVRYECNKPLELFGQVEVMCENGIWT
EKPKCRDSTGKCGPPPPIDNGDITSLSLPVYEPLSSVEYQCQKYYLLKGKKTITCRNGKWSEPPTCLHAC
VIPENIMESHNIILKWRHTEKIYSHSGEDIEFGCKYGYYKARDSPPFRTKCINGTINYPTCV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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