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Report for CCDS37237.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37237.1 Public Mus musculus 15 Ppp1r1a 23 108 98 CCDS HistoryNCBI Gene:58200Re-query CCDS DB by CCDS ID:37237.1Re-query CCDS DB by GeneID:58200See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37237.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023133.7 ENSMUSP00000023133.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023133.7Link to Ensembl Protein Viewer:ENSMUSP00000023133.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023133Re-query CCDS DB by Protein ID:ENSMUSP00000023133
Original member Current member NCBI NM_021391.3 NP_067366.1 Accepted alive Link to Nucleotide Sequence:NM_021391.3Link to Protein Sequence:NP_067366.1Re-query CCDS DB by Nucleotide ID:NM_021391Re-query CCDS DB by Protein ID:NP_067366Link to BLAST:NP_067366.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067366.1 171 Q9ERT9 171 100% 0 0

Chromosomal Locations for CCDS 37237.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 103530944 103530949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103531354 103531460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103532326 103532481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103533038 103533101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103533457 103533494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103534350 103534410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103537795 103537878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (516 nt):
ATGGAGCCCGACAACAGCCCACGGAAGATCCAGTTTACGGTCCCGCTGCTGGAGCCTCACCTGGACCCGG
AGGCGGCGGAGCAGATTCGGAGGCGCCGCCCCACCCCTGCCACACTTGTGCTGACCAGTGATCAGTCCTC
CCCAGAAATAGATGAAGACCGGATCCCCAACTCACTTCTCAAGTCCACCTTGTCAATGTCTCCACGGCAA
CGGAAGAAGATGACAAGGACCACACCCACCATGAAAGAGCTCCAGACGATGGTTGAACATCACCTAGGGC
AACAGAAGCAAGGGGAAGAACCTGAGGGAGCCACTGAGAGCACAGGGAACCAGGAGTCCTGCCCACCTGG
GATCCCAGACACAGGCTCGGCGTCAAGGCCAGATACCCCCGGGACAGCACAAAAGTCTGCAGAATCCAAC
CCCAAGACTCAGGAGCAGTGTGGTGTGGAGCCCAGAACAGAGGATTCTTCAGCCCACATGCTACCACTGG
ATTCCCAGGGAGCCAGCTTGGTCTGA

Translation (171 aa):
MEPDNSPRKIQFTVPLLEPHLDPEAAEQIRRRRPTPATLVLTSDQSSPEIDEDRIPNSLLKSTLSMSPRQ
RKKMTRTTPTMKELQTMVEHHLGQQKQGEEPEGATESTGNQESCPPGIPDTGSASRPDTPGTAQKSAESN
PKTQEQCGVEPRTEDSSAHMLPLDSQGASLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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