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Report for CCDS27127.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27127.1 Public Mus musculus 14 Cideb 23 108 98 CCDS HistoryNCBI Gene:12684Re-query CCDS DB by CCDS ID:27127.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27127.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001497.8 ENSMUSP00000001497.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001497.8Link to Ensembl Protein Viewer:ENSMUSP00000001497.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001497Re-query CCDS DB by Protein ID:ENSMUSP00000001497
Original member Current member NCBI NM_009894.3 NP_034024.2 Accepted alive Link to Nucleotide Sequence:NM_009894.3Link to Protein Sequence:NP_034024.2Re-query CCDS DB by Nucleotide ID:NM_009894Re-query CCDS DB by Protein ID:NP_034024Link to BLAST:NP_034024.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034024.2 219 O70303 219 100% 0 0

Chromosomal Locations for CCDS 27127.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55754436 55754571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55754711 55754901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55755125 55755271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55757842 55757986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55758252 55758292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGGAGTACCTTTCAGCCTTCAACCCCAATGGCCTGCTAAGGTCAGTATCCACTGTGAGCTCGGAGTTAA
GCCGTAGGGTCTGGAACTCAGCTCCTCCACCTCAGCGACCCTTCCGTGTCTGTGATCATAAGCGGACAGT
CCGGAAAGGACTGACAGCTGCCAGCCTCCAAGAACTGCTAGATAAGGTCCTGGAGACCTTGCTGCTACGT
GGAGTGCTAACACTGGTCCTGGAGGAGGATGGGACTGCTGTGGACAGTGAGGACTTCTTCCAGCTGCTGG
AGGACGACACGTGCTTGATGGTGCTTGAGCAGGGCCAGAGCTGGAGCCCCAAGAGTGGGATGTTGTCATA
CGGCCTAGGACGGGAGAAGCCAAAACACAGCAAGGACATCGCCCGCATCACCTTCGATGTGTACAAGCAA
AATCCCCGAGACCTCTTTGGCAGCCTCAACGTGAAAGCTACATTCTATGGACTCTACTCCATGAGCTGTG
ATTTCCAAGGAGTTGGCCCTAAAAGAGTACTCAGGGAGCTCCTCCGTTGGACTTCCTCGCTGCTGCAAGG
CCTGGGCCATATGCTGCTGGGCATCTCCTCCACCCTTCGCCATGTGGTGGAGGGGGCTGATCGATGGCAG
TGGCACGGGCAGAGACACCTCCACTCCTAA

Translation (219 aa):
MEYLSAFNPNGLLRSVSTVSSELSRRVWNSAPPPQRPFRVCDHKRTVRKGLTAASLQELLDKVLETLLLR
GVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLEQGQSWSPKSGMLSYGLGREKPKHSKDIARITFDVYKQ
NPRDLFGSLNVKATFYGLYSMSCDFQGVGPKRVLRELLRWTSSLLQGLGHMLLGISSTLRHVVEGADRWQ
WHGQRHLHS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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