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Report for CCDS22278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22278.1 Public Mus musculus 8 Tlr3 23 108 98 CCDS HistoryNCBI Gene:142980Re-query CCDS DB by CCDS ID:22278.1Re-query CCDS DB by GeneID:142980See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22278.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034056.11 ENSMUSP00000034056.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034056.11Link to Ensembl Protein Viewer:ENSMUSP00000034056.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034056Re-query CCDS DB by Protein ID:ENSMUSP00000034056
Original member Current member EBI ENSMUST00000167106.2 ENSMUSP00000126556.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167106.2Link to Ensembl Protein Viewer:ENSMUSP00000126556.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167106Re-query CCDS DB by Protein ID:ENSMUSP00000126556
Original member Current member EBI ENSMUST00000209772.1 ENSMUSP00000147738.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209772.1Link to Ensembl Protein Viewer:ENSMUSP00000147738.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209772Re-query CCDS DB by Protein ID:ENSMUSP00000147738
Original member Current member NCBI NM_001357316.1 NP_001344245.1 Accepted alive Link to Nucleotide Sequence:NM_001357316.1Link to Protein Sequence:NP_001344245.1Re-query CCDS DB by Nucleotide ID:NM_001357316Re-query CCDS DB by Protein ID:NP_001344245Link to BLAST:NP_001344245.1
Original member Current member NCBI NM_001357317.1 NP_001344246.1 Accepted alive Link to Nucleotide Sequence:NM_001357317.1Link to Protein Sequence:NP_001344246.1Re-query CCDS DB by Nucleotide ID:NM_001357317Re-query CCDS DB by Protein ID:NP_001344246Link to BLAST:NP_001344246.1
Original member Current member NCBI NM_126166.5 NP_569054.2 Accepted alive Link to Nucleotide Sequence:NM_126166.5Link to Protein Sequence:NP_569054.2Re-query CCDS DB by Nucleotide ID:NM_126166Re-query CCDS DB by Protein ID:NP_569054Link to BLAST:NP_569054.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344245.1 905 Q99MB1 905 100% 0 0
NP_001344246.1 905 Q99MB1 905 100% 0 0
NP_569054.2 905 Q99MB1 905 100% 0 0

Chromosomal Locations for CCDS 22278.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 45396913 45397141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45397370 45399222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45400646 45400837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45402698 45403141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2718 nt):
ATGAAAGGGTGTTCCTCTTATCTAATGTACTCCTTTGGGGGACTTTTGTCCCTATGGATTCTTCTGGTGT
CTTCCACAAACCAATGCACTGTGAGATACAACGTAGCTGACTGCAGCCATTTGAAGCTAACACACATACC
TGATGATCTTCCCTCTAACATAACAGTGTTGAATCTTACTCACAACCAACTCAGAAGATTACCACCTACC
AACTTTACAAGATACAGCCAACTTGCTATCTTGGATGCAGGATTTAACTCCATTTCAAAACTGGAGCCAG
AACTGTGCCAAATACTCCCTTTGTTGAAAGTATTGAACCTGCAACATAATGAGCTCTCTCAGATTTCTGA
TCAAACCTTTGTCTTCTGCACGAACCTGACAGAACTCGATCTAATGTCTAACTCAATACACAAAATTAAA
AGCAACCCTTTCAAAAACCAGAAGAATCTAATCAAATTAGATTTGTCTCATAATGGTTTATCATCTACAA
AGTTGGGAACGGGGGTCCAACTGGAGAACCTCCAAGAACTGCTCTTAGCAAAAAATAAAATCCTTGCGTT
GCGAAGTGAAGAACTTGAGTTTCTTGGCAATTCTTCTTTACGAAAGTTGGACTTGTCATCAAATCCACTT
AAAGAGTTCTCCCCGGGGTGTTTCCAGACAATTGGCAAGTTATTCGCCCTCCTCTTGAACAACGCCCAAC
TGAACCCCCACCTCACAGAGAAGCTTTGCTGGGAACTTTCAAACACAAGCATCCAGAATCTCTCTCTGGC
TAACAACCAGCTGCTGGCCACCAGCGAGAGCACTTTCTCTGGGCTGAAGTGGACAAATCTCACCCAGCTC
GATCTTTCCTACAACAACCTCCATGATGTCGGCAACGGTTCCTTCTCCTATCTCCCAAGCCTGAGGTATC
TGTCTCTGGAGTACAACAATATACAGCGTCTGTCCCCTCGCTCTTTTTATGGACTCTCCAACCTGAGGTA
CCTGAGTTTGAAGCGAGCATTTACTAAGCAAAGTGTTTCACTTGCTTCACATCCCAACATTGACGATTTT
TCCTTTCAATGGTTAAAATATTTGGAATATCTCAACATGGATGACAATAATATTCCAAGTACCAAAAGCA
ATACCTTCACGGGATTGGTGAGTCTGAAGTACCTAAGTCTTTCCAAAACTTTCACAAGTTTGCAAACTTT
AACAAATGAAACATTTGTGTCACTTGCTCATTCTCCCTTGCTCACTCTCAACTTAACGAAAAATCACATC
TCAAAAATAGCAAATGGTACTTTCTCTTGGTTAGGCCAACTCAGGATACTTGATCTCGGCCTTAATGAAA
TTGAACAAAAACTCAGCGGCCAGGAATGGAGAGGTCTGAGAAATATATTTGAGATCTACCTATCCTATAA
CAAATACCTCCAACTGTCTACCAGTTCCTTTGCATTGGTCCCCAGCCTTCAAAGACTGATGCTCAGGAGG
GTGGCCCTTAAAAATGTGGATATCTCCCCTTCACCTTTCCGCCCTCTTCGTAACTTGACCATTCTGGACT
TAAGCAACAACAACATAGCCAACATAAATGAGGACTTGCTGGAGGGTCTTGAGAATCTAGAAATCCTGGA
TTTTCAGCACAATAACTTAGCCAGGCTCTGGAAACGCGCAAACCCCGGTGGTCCCGTTAATTTCCTGAAG
GGGCTGTCTCACCTCCACATCTTGAATTTAGAGTCCAACGGCTTAGATGAAATCCCAGTCGGGGTTTTCA
AGAACTTATTCGAACTAAAGAGCATCAATCTAGGACTGAATAACTTAAACAAACTTGAACCATTCATTTT
TGATGACCAGACATCTCTAAGGTCACTGAACCTCCAGAAGAACCTCATAACATCTGTTGAGAAGGATGTT
TTCGGGCCGCCTTTTCAAAACCTGAACAGTTTAGATATGCGCTTCAATCCGTTCGACTGCACGTGTGAAA
GTATTTCCTGGTTTGTTAACTGGATCAACCAGACCCACACTAATATCTCTGAGCTGTCCACTCACTACCT
CTGTAACACTCCACATCATTATTATGGCTTCCCCCTGAAGCTTTTCGATACATCATCCTGTAAAGACAGC
GCCCCCTTTGAACTCCTCTTCATAATCAGCACCAGTATGCTCCTGGTTTTTATACTTGTGGTACTGCTCA
TTCACATCGAGGGCTGGAGGATCTCTTTTTACTGGAATGTTTCAGTGCATCGGATTCTTGGTTTCAAGGA
AATAGACACACAGGCTGAGCAGTTTGAATATACAGCCTACATAATTCATGCCCATAAAGACAGAGACTGG
GTCTGGGAACATTTCTCCCCAATGGAAGAACAAGACCAATCTCTCAAATTTTGCCTAGAAGAAAGGGACT
TTGAAGCAGGCGTCCTTGGACTTGAAGCAATTGTTAATAGCATCAAAAGAAGCCGAAAAATCATTTTCGT
TATCACACACCATTTATTAAAAGACCCTCTGTGCAGAAGATTCAAGGTACATCACGCAGTTCAGCAAGCT
ATTGAGCAAAATCTGGATTCAATTATACTGATTTTTCTCCAGAATATTCCAGATTATAAACTAAACCATG
CACTCTGTTTGCGAAGAGGAATGTTTAAATCTCATTGCATCTTGAACTGGCCAGTTCAGAAAGAACGGAT
AAATGCCTTTCATCATAAATTGCAAGTAGCACTTGGATCTCGGAATTCAGCACATTAA

Translation (905 aa):
MKGCSSYLMYSFGGLLSLWILLVSSTNQCTVRYNVADCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPT
NFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIK
SNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPL
KEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQL
DLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDF
SFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHI
SKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRR
VALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLK
GLSHLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEKDV
FGPPFQNLNSLDMRFNPFDCTCESISWFVNWINQTHTNISELSTHYLCNTPHHYYGFPLKLFDTSSCKDS
APFELLFIISTSMLLVFILVVLLIHIEGWRISFYWNVSVHRILGFKEIDTQAEQFEYTAYIIHAHKDRDW
VWEHFSPMEEQDQSLKFCLEERDFEAGVLGLEAIVNSIKRSRKIIFVITHHLLKDPLCRRFKVHHAVQQA
IEQNLDSIILIFLQNIPDYKLNHALCLRRGMFKSHCILNWPVQKERINAFHHKLQVALGSRNSAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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