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Report for CCDS22701.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22701.1 Public Mus musculus 8 Sdr42e1 23 108 98 CCDS HistoryNCBI Gene:74032Re-query CCDS DB by CCDS ID:22701.1Re-query CCDS DB by GeneID:74032See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22701.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037955.13 ENSMUSP00000044457.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037955.13Link to Ensembl Protein Viewer:ENSMUSP00000044457.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000037955Re-query CCDS DB by Protein ID:ENSMUSP00000044457
Original member Current member EBI ENSMUST00000173522.7 ENSMUSP00000133782.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173522.7Link to Ensembl Protein Viewer:ENSMUSP00000133782.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173522Re-query CCDS DB by Protein ID:ENSMUSP00000133782
Original member Current member NCBI NM_001357272.1 NP_001344201.1 Accepted alive Link to Nucleotide Sequence:NM_001357272.1Link to Protein Sequence:NP_001344201.1Re-query CCDS DB by Nucleotide ID:NM_001357272Re-query CCDS DB by Protein ID:NP_001344201Link to BLAST:NP_001344201.1
Original member Current member NCBI NM_001357273.1 NP_001344202.1 Accepted alive Link to Nucleotide Sequence:NM_001357273.1Link to Protein Sequence:NP_001344202.1Re-query CCDS DB by Nucleotide ID:NM_001357273Re-query CCDS DB by Protein ID:NP_001344202Link to BLAST:NP_001344202.1
Original member Current member NCBI NM_028725.4 NP_083001.1 Accepted alive Link to Nucleotide Sequence:NM_028725.4Link to Protein Sequence:NP_083001.1Re-query CCDS DB by Nucleotide ID:NM_028725Re-query CCDS DB by Protein ID:NP_083001Link to BLAST:NP_083001.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344201.1 394 Q9D665 394 100% 0 0
NP_001344202.1 394 Q9D665 394 100% 0 0
NP_083001.1 394 Q9D665 394 100% 0 0

Chromosomal Locations for CCDS 22701.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 117662716 117663832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117664987 117665054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1185 nt):
ATGGACTCCCCAAGGTTCCCAGAGGAAACCGTCCTCATCACTGGAGGAGGAGGATATTTTGGCTTTCGCC
TCGGCTGCGCCCTGAACCAGAAAGGAGCCCGTGTGATTCTGTTTGACATCACCCAACCAGCCCAGAACCT
TCCAGAGGGAATCAAATTCGTCTGCGGAGATATCCGCTGCCTCGCTGACGTGGAGACGGCTTTCCAGGAT
GCTGAGAAAGTTGCGTGCGTGTTCCACGTCGCCTCTTACGGCATGTCTGGGAGGGAGCAACTGAACAAGA
CCCAGATCGAAGAGGTCAACGTGGGTGGCACAGAGAACATCCTCCGGGCCTGCCTGGAGAGAGGAGTGCC
CAGATTAGTCTACACAAGCACATTCAATGTCATCTTTGGAGGTCAAGTCATCAGAAATGGGGACGAGTCT
CTGCCTTACCTGCCTCTTCACCTACACCCGGATCACTACTCCAGGACCAAGTCCATCGCAGAGAAGAAGG
TCCTGGAAGCCAATGGCTTGGCCTTCAAGCAGGGCGATGGTATACTCCGGACCTGCGCCATCAGGCCAGC
CGGCATCTACGGGGCTGGGGAGCAGAGGCATCTTCCCAGGATAGTGAGTTACATTGAGAGGGGCCTGTTC
AGATTTGTGTACGGGGATCCCCAGAGCCTGGTTGAGTTTGTCCACGTGGATAACCTGGCGAAGGCTCACA
TTCTGGCCTCTGAGGCTCTGAAAGCCGATAAAGGCCACGTTGCCTCCGGTCAGCCCTACTTCATCTCAGA
TGGTAGACCGGTCAATAACTTTGAGTTCTTTAGGCCACTGGTCGAGGGCCTGGGCTACACATTCCCATCC
ACCCGCCTGCCCCTAACCCTCATCTACTGCCTTGCTTTCTTGGTAGAGATGACCCACTTCATTGTGGGCA
GGCTCTACAACTTCCAGCCCTTCCTCACCCGCACCGAAGTTTATAAAACTGGCGTCACACATTACTTCAG
CTTAGAGAAAGCCAAGAAAGAGCTAGGCTTCGAGCCTCAGCCATTTGACCTGCAGGAGGTAGTAGAGTGG
TTTAAAGCCCATGGTCACGGCCGAGGGGCTGCGGGTCAAGACTCGGAGTTTATGCTGTGGGATGGAATTC
TGATCCTACTCCTGGCACTTTCTGTTCTTACCTGGATCCTTCCCTCCACCACCCTGTCCATATGA

Translation (394 aa):
MDSPRFPEETVLITGGGGYFGFRLGCALNQKGARVILFDITQPAQNLPEGIKFVCGDIRCLADVETAFQD
AEKVACVFHVASYGMSGREQLNKTQIEEVNVGGTENILRACLERGVPRLVYTSTFNVIFGGQVIRNGDES
LPYLPLHLHPDHYSRTKSIAEKKVLEANGLAFKQGDGILRTCAIRPAGIYGAGEQRHLPRIVSYIERGLF
RFVYGDPQSLVEFVHVDNLAKAHILASEALKADKGHVASGQPYFISDGRPVNNFEFFRPLVEGLGYTFPS
TRLPLTLIYCLAFLVEMTHFIVGRLYNFQPFLTRTEVYKTGVTHYFSLEKAKKELGFEPQPFDLQEVVEW
FKAHGHGRGAAGQDSEFMLWDGILILLLALSVLTWILPSTTLSI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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