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Report for CCDS28963.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28963.1 Public Mus musculus 17 Ypel5 23 108 98 CCDS HistoryNCBI Gene:383295Re-query CCDS DB by CCDS ID:28963.1Re-query CCDS DB by GeneID:383295See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28963.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045174.6 ENSMUSP00000037764.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045174.6Link to Ensembl Protein Viewer:ENSMUSP00000037764.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000045174Re-query CCDS DB by Protein ID:ENSMUSP00000037764
Original member Current member EBI ENSMUST00000233886.1 ENSMUSP00000156450.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233886.1Link to Ensembl Protein Viewer:ENSMUSP00000156450.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233886Re-query CCDS DB by Protein ID:ENSMUSP00000156450
Original member Current member EBI ENSMUST00000233210.1 ENSMUSP00000156501.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233210.1Link to Ensembl Protein Viewer:ENSMUSP00000156501.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233210Re-query CCDS DB by Protein ID:ENSMUSP00000156501
Original member Current member NCBI NM_001357368.1 NP_001344297.1 Accepted alive Link to Nucleotide Sequence:NM_001357368.1Link to Protein Sequence:NP_001344297.1Re-query CCDS DB by Nucleotide ID:NM_001357368Re-query CCDS DB by Protein ID:NP_001344297Link to BLAST:NP_001344297.1
Original member Current member NCBI NM_001357369.1 NP_001344298.1 Accepted alive Link to Nucleotide Sequence:NM_001357369.1Link to Protein Sequence:NP_001344298.1Re-query CCDS DB by Nucleotide ID:NM_001357369Re-query CCDS DB by Protein ID:NP_001344298Link to BLAST:NP_001344298.1
Original member Current member NCBI NM_001357370.1 NP_001344299.1 Accepted alive Link to Nucleotide Sequence:NM_001357370.1Link to Protein Sequence:NP_001344299.1Re-query CCDS DB by Nucleotide ID:NM_001357370Re-query CCDS DB by Protein ID:NP_001344299Link to BLAST:NP_001344299.1
Original member Current member NCBI NM_027166.6 NP_081442.1 Accepted alive Link to Nucleotide Sequence:NM_027166.6Link to Protein Sequence:NP_081442.1Re-query CCDS DB by Nucleotide ID:NM_027166Re-query CCDS DB by Protein ID:NP_081442Link to BLAST:NP_081442.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344297.1 121 P62700 121 100% 0 0
NP_001344298.1 121 P62700 121 100% 0 0
NP_001344299.1 121 P62700 121 100% 0 0
NP_081442.1 121 P62700 121 100% 0 0

Chromosomal Locations for CCDS 28963.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 72846303 72846443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 72848580 72848804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (366 nt):
ATGGGCAGAATCTTTCTTGACCATATCGGTGGTACCCGTCTGTTTTCTTGTGCAAACTGTGATACAATCC
TGACCAATCGCTCAGAACTCATCTCTACTCGGTTCACAGGCGCCACTGGTAGAGCATTTCTTTTTAACAA
GGTAGTTAACTTGCAGTACAGTGAAGTTCAAGATCGGGTCATGCTCACTGGCCGCCACATGGTTCGAGAT
GTGAGCTGCAAAAACTGCAATAGCAAACTGGGATGGATCTATGAGTTTGCTACTGAAGACAGCCAGCGTT
ATAAGGAAGGCCGTGTGATCCTGGAACGTGCACTAGTTCGAGAGAGTGAAGGCTTTGAAGAGCATGTACC
ATCTGATAACTCTTGA

Translation (121 aa):
MGRIFLDHIGGTRLFSCANCDTILTNRSELISTRFTGATGRAFLFNKVVNLQYSEVQDRVMLTGRHMVRD
VSCKNCNSKLGWIYEFATEDSQRYKEGRVILERALVRESEGFEEHVPSDNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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