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Report for CCDS27901.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27901.1 Public Mus musculus 15 Copz1 23 108 98 CCDS HistoryNCBI Gene:56447Re-query CCDS DB by CCDS ID:27901.1Re-query CCDS DB by GeneID:56447See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27901.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100162.4 ENSMUSP00000097738.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100162.4Link to Ensembl Protein Viewer:ENSMUSP00000097738.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100162Re-query CCDS DB by Protein ID:ENSMUSP00000097738
Original member Current member NCBI NM_019817.2 NP_062791.1 Accepted alive Link to Nucleotide Sequence:NM_019817.2Link to Protein Sequence:NP_062791.1Re-query CCDS DB by Nucleotide ID:NM_019817Re-query CCDS DB by Protein ID:NP_062791Link to BLAST:NP_062791.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062791.1 177 P61924 177 100% 0 0

Chromosomal Locations for CCDS 27901.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 103272924 103272941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103289101 103289169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103290675 103290756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103291329 103291420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103294722 103294777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103296533 103296610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103296734 103296785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103297887 103297925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103298693 103298740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGGAGGCGCTGATTTTGGAGCCCTCCCTGTACACTGTCAAGGCCATCCTGATTCTGGACAATGATGGAG
ACCGACTCTTCGCCAAGTACTATGACGACACCTACCCCAGTGTCAAGGAGCAAAAGGCCTTTGAGAAGAA
CATTTTCAACAAGACCCATCGGACGGATAGTGAAATCGCTCTGTTGGAAGGATTGACAGTGGTCTATAAA
AGTAGCATCGATCTCTATTTCTATGTGATTGGCAGCTCCTATGAAAATGAGCTGATGCTTATGGCTGTTC
TGAACTGCCTCTTCGATTCCCTGAGCCAGATGCTGAGGAAAAATGTAGAAAAGCGAGCTTTGCTGGAGAA
CATGGAGGGCCTCTTCTTGGCTGTGGATGAAATTGTAGATGGAGGGGTGATCCTAGAGAGCGACCCCCAG
CAAGTGGTGCACCGGGTGGCTTTGAGGGGTGAAGACGTCCCCCTTACAGAGCAGACCGTGTCTCAGGTGC
TGCAGTCAGCCAAAGAACAGATCAAGTGGTCCCTCCTTCGGTGA

Translation (177 aa):
MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYK
SSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQ
QVVHRVALRGEDVPLTEQTVSQVLQSAKEQIKWSLLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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