NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, January 28, 2025, starting at 8:00 a.m. EST for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS90653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90653.1 Public Mus musculus 9 Aste1 23 108 98 CCDS HistoryNCBI Gene:66595Re-query CCDS DB by CCDS ID:90653.1Re-query CCDS DB by GeneID:66595See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90653.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000123807.7 ENSMUSP00000149596.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000123807.7Link to Ensembl Protein Viewer:ENSMUSP00000149596.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000123807Re-query CCDS DB by Protein ID:ENSMUSP00000149596
Original member Current member NCBI NM_001357902.1 NP_001344831.1 Accepted alive Link to Nucleotide Sequence:NM_001357902.1Link to Protein Sequence:NP_001344831.1Re-query CCDS DB by Nucleotide ID:NM_001357902Re-query CCDS DB by Protein ID:NP_001344831Link to BLAST:NP_001344831.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344831.1 611 Q8BIR2-2 611 100% 0 0

Chromosomal Locations for CCDS 90653.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 105396654 105396705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105396798 105397858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105401476 105401686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105403396 105403591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105404999 105405314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1836 nt):
ATGGCTATTCTCTCTTCCACCGACTTTGCTTCAATTCTGACTTGGAGCTCAGATGGAGGATGTGACATTT
CAGATAAAAAGCTGACAACTTTGAAGGATCGAGCAAAAGAGAAGATCCAAGCAGCCCGTTCCCTTTCTCT
TGGTGGGGGTGGGAATGTGTGCCCCTTACTCATCCGAGAAGTGTTCATACAGGTTTTGATCAGGCTTGAG
GTATGTTTCGTACAGAGCTTTTCAGAAGCAGATCGGGACATTATGACACTTGCCAATCACTGGAATTGTC
CTGTGCTATCATCGGATAGTGACTTTTGCATTTTTGACTTGAGAAGTGGGTTTTGCTCACTGAATAGCTT
CCAGTGGAGAAATCTGAACACTATTAAAGATACACAAGATTACTACATTCCCGCCAGAAGCTTTTCCCTC
AATGCATTCTGCCATTACTTCAACAACATGAACAAAGCTCTACTACCTCTCTTTGCGGTGCTGTGTGGAA
ATGACCATGTTAACCTGCCCATCATGGACACATTCATAAGTAAAGTACGTCTACCCCTTAGTTCTAAGGG
GAGGAGATATCACCGAGTCCTGGGACTTCTGAACTGGTTGTCTCATTTCGATGACCCCACTGAAGCACTA
GATAACGTTCTGAAGTCTCTCCCCAAGAAGAGTCGAGAAAATGTTAAGGAACTTCTCTGCTGCTCCATGG
AGGAGTACCAGCAGTCCCCGGTGAAGCTGCAGGACTTCTTCCAGTATGGTAGTTATGTCTGTACGGACGC
TTCGGATCTGGGTCTACCAGAGTGGGTGCTAGGAGCTCTGGCCAAAGGCCAGCTACCACCTTTCATCAGT
GATGCTTTGGTGCTCCGAAGGACCTTTCTTCACACACAGGTAGAAAACATGCAGCGGCCAAATGCTCACA
GAATATCTCAGCCCATCCGCCAAATCATCTATGGACTCCTTTTGAATGGCCCATCACACGCAGAAGATAT
AGCCCAGAATACATTGCCTTCCCAGCTTCTGGCTTTCAATGAAGTGGAAAGAATTGATACAAATATCAAA
ACATCAACTGTTTATGCAAAGCAACTGCTCAAGGATCAATGTGACTTGAGCAAATTGGCTGAGCTCCCCT
TGGCTAGGCGGCAGATGCTTCTCTTAGAAGCCCTGAAGGTCAAACAGGTTGTCCTGGAGTCCATCCCTAC
TTTTCTGAAGTTGCCCATTGCTGTGACTTGTTACTGGTTGCAGTCCACAGAAGCCAAGGCAAAGCTCCAT
CATCTGCAGGCCCTACTGCTGGGGATGCTGAGGGAACCCTTGCATGCCATCGTCAACAGCCCTGGCACTG
AAGATCCACAGAGAGGTGGTGCCAAGATGTTGTATGAAGAATTATGCCAGGTGAAGGCACCCATGCGGCC
GGGTCCAAGAGTGGATTTAGACACAGCGCACGTCTTCTGTCAGTGGCAGTCCTGTCTCCAGATGGGGTTA
TATCTCAACCAGCTGCTGTCCACTCCTCTGCCAGAGCCAAACCTAACTTGGTTGTACAACGGAAGCCTGG
TCCACAGACTCTGCCAGCAACTGCCAGCATCTAGTTCTGTAGAAAGCCTCCTGAGTCTATGTCCTGAGGC
AAAGCAACTTTATGAACATCTGTTCAATGCCACAAAATCATATGCCCCAGCTGAATTGTTCTTACCAAAA
ACTAAATCAAAATCCAAAAAAAAGAGGCAGAAGAAAAAGGTTGCCAGCCTGGGAACCACTGCAGATGCCA
AGCACTGGTATGACAGAAGCAACCGGTTTGGACCGTTAATGCCTGAAAGCTTGGAGGAGCATGTAGAGAA
CTCAGAGCTTGAATAA

Translation (611 aa):
MAILSSTDFASILTWSSDGGCDISDKKLTTLKDRAKEKIQAARSLSLGGGGNVCPLLIREVFIQVLIRLE
VCFVQSFSEADRDIMTLANHWNCPVLSSDSDFCIFDLRSGFCSLNSFQWRNLNTIKDTQDYYIPARSFSL
NAFCHYFNNMNKALLPLFAVLCGNDHVNLPIMDTFISKVRLPLSSKGRRYHRVLGLLNWLSHFDDPTEAL
DNVLKSLPKKSRENVKELLCCSMEEYQQSPVKLQDFFQYGSYVCTDASDLGLPEWVLGALAKGQLPPFIS
DALVLRRTFLHTQVENMQRPNAHRISQPIRQIIYGLLLNGPSHAEDIAQNTLPSQLLAFNEVERIDTNIK
TSTVYAKQLLKDQCDLSKLAELPLARRQMLLLEALKVKQVVLESIPTFLKLPIAVTCYWLQSTEAKAKLH
HLQALLLGMLREPLHAIVNSPGTEDPQRGGAKMLYEELCQVKAPMRPGPRVDLDTAHVFCQWQSCLQMGL
YLNQLLSTPLPEPNLTWLYNGSLVHRLCQQLPASSSVESLLSLCPEAKQLYEHLFNATKSYAPAELFLPK
TKSKSKKKRQKKKVASLGTTADAKHWYDRSNRFGPLMPESLEEHVENSELE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH