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Report for CCDS90251.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90251.1 Public Mus musculus 7 Lysmd4 23 108 98 CCDS HistoryNCBI Gene:75099Re-query CCDS DB by CCDS ID:90251.1Re-query CCDS DB by GeneID:75099See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90251.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179106.2 ENSMUSP00000136151.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179106.2Link to Ensembl Protein Viewer:ENSMUSP00000136151.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000179106Re-query CCDS DB by Protein ID:ENSMUSP00000136151
Original member Current member EBI ENSMUST00000208698.1 ENSMUSP00000146624.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208698.1Link to Ensembl Protein Viewer:ENSMUSP00000146624.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208698Re-query CCDS DB by Protein ID:ENSMUSP00000146624
Original member Current member EBI ENSMUST00000207757.1 ENSMUSP00000147084.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207757.1Link to Ensembl Protein Viewer:ENSMUSP00000147084.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207757Re-query CCDS DB by Protein ID:ENSMUSP00000147084
Original member Current member EBI ENSMUST00000207823.1 ENSMUSP00000147179.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207823.1Link to Ensembl Protein Viewer:ENSMUSP00000147179.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207823Re-query CCDS DB by Protein ID:ENSMUSP00000147179
Original member Current member NCBI NM_001357962.1 NP_001344891.1 Accepted alive Link to Nucleotide Sequence:NM_001357962.1Link to Protein Sequence:NP_001344891.1Re-query CCDS DB by Nucleotide ID:NM_001357962Re-query CCDS DB by Protein ID:NP_001344891Link to BLAST:NP_001344891.1
Original member Current member NCBI NM_001357963.1 NP_001344892.1 Accepted alive Link to Nucleotide Sequence:NM_001357963.1Link to Protein Sequence:NP_001344892.1Re-query CCDS DB by Nucleotide ID:NM_001357963Re-query CCDS DB by Protein ID:NP_001344892Link to BLAST:NP_001344892.1
Original member Current member NCBI NM_001357964.1 NP_001344893.1 Accepted alive Link to Nucleotide Sequence:NM_001357964.1Link to Protein Sequence:NP_001344893.1Re-query CCDS DB by Nucleotide ID:NM_001357964Re-query CCDS DB by Protein ID:NP_001344893Link to BLAST:NP_001344893.1

Chromosomal Locations for CCDS 90251.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 67223619 67223891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67224376 67224387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (285 nt):
ATGAGGCAGAAGGAAGTGTTAGCCAAGAGCTTCCAAGGTCCAGCTGCTGTCTGCAGGACTCCAAACAGCC
ACGTTTACATGTTCAACAATGGCAGCGGGGACTCTGGGGACTCCTCTGAGGAAGAGTCACATCAGGTGGT
GTTACGACCCCGGGGCAAGGAGCACCAGAAGAACAGCAGCCAACGGCCAGGAGCAGGCACCATGGTTCTG
CTGCAGCGGGAGCTGGCTCAGGAAGACAGCCTCAACAAGCTGGCTCTCCAGTATGGCTGCAAACACTCAG
AGTGA

Translation (94 aa):
MRQKEVLAKSFQGPAAVCRTPNSHVYMFNNGSGDSGDSSEEESHQVVLRPRGKEHQKNSSQRPGAGTMVL
LQRELAQEDSLNKLALQYGCKHSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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